Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RJD36_RS10645 Genome accession   NZ_CP136943
Coordinates   2102856..2103371 (-) Length   171 a.a.
NCBI ID   WP_003066357.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP082     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2097856..2108371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS10615 (RJD36_10615) - 2099286..2100230 (+) 945 WP_003066347.1 magnesium transporter CorA family protein -
  RJD36_RS10620 (RJD36_10620) - 2100533..2101189 (+) 657 WP_013852223.1 DUF1129 domain-containing protein -
  RJD36_RS10625 (RJD36_10625) - 2101234..2101683 (-) 450 WP_003066351.1 hypothetical protein -
  RJD36_RS10630 (RJD36_10630) - 2101685..2101894 (-) 210 WP_003066353.1 helix-turn-helix transcriptional regulator -
  RJD36_RS10635 (RJD36_10635) - 2101897..2102421 (-) 525 WP_003066354.1 DUF2975 domain-containing protein -
  RJD36_RS10640 (RJD36_10640) rpsR 2102556..2102795 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  RJD36_RS10645 (RJD36_10645) ssbA 2102856..2103371 (-) 516 WP_003066357.1 single-stranded DNA-binding protein Machinery gene
  RJD36_RS10650 (RJD36_10650) rpsF 2103383..2103673 (-) 291 WP_003066359.1 30S ribosomal protein S6 -
  RJD36_RS10655 (RJD36_10655) - 2103916..2104062 (-) 147 WP_247909243.1 ATP-dependent protease -
  RJD36_RS10660 (RJD36_10660) - 2104557..2104835 (-) 279 WP_003066363.1 biotin transporter BioY -
  RJD36_RS10665 (RJD36_10665) bioD 2104835..2105503 (-) 669 WP_003066365.1 dethiobiotin synthase -
  RJD36_RS10670 (RJD36_10670) bioB 2105496..2106429 (-) 934 Protein_2052 biotin synthase BioB -
  RJD36_RS10675 (RJD36_10675) ahpF 2106705..2108243 (-) 1539 WP_003066369.1 alkyl hydroperoxide reductase subunit F -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18919.49 Da        Isoelectric Point: 4.7187

>NTDB_id=893563 RJD36_RS10645 WP_003066357.1 2102856..2103371(-) (ssbA) [Streptococcus pasteurianus strain WUSP082]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLSNWAKKGTLIGVTGRIQTR
NYENQQGQRVYVTEIVADNFQILESRATREGQSGGSYNGGFNNNNSSFGGSSNDGGFSSQSSQSQTPNFGRDESPFGNSN
PMDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=893563 RJD36_RS10645 WP_003066357.1 2102856..2103371(-) (ssbA) [Streptococcus pasteurianus strain WUSP082]
ATGATTAATAATGTAGTACTTGTCGGTCGTATGACTCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCTGTTGC
CACATTTACACTTGCTGTAAATCGCAACTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTTATTAACTGTGTGATTT
GGCGCCAACAGGCAGAAAATCTGTCTAATTGGGCTAAAAAAGGCACATTGATTGGTGTTACAGGTCGTATCCAGACTCGT
AATTATGAAAATCAACAAGGTCAACGTGTTTACGTAACAGAGATTGTTGCAGATAATTTCCAAATCTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAGGTGGTTCATATAACGGTGGATTCAACAATAACAATTCATCATTTGGTGGCTCATCAAACG
ACGGTGGTTTCTCATCACAATCTTCACAATCACAAACACCTAACTTTGGTCGTGATGAAAGCCCATTTGGCAATTCAAAT
CCAATGGACATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.222

100

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.596