Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RPW97_RS20730 Genome accession   NZ_CP136922
Coordinates   4470301..4471350 (+) Length   349 a.a.
NCBI ID   WP_279703676.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain 503     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4452027..4514362 4470301..4471350 within 0


Gene organization within MGE regions


Location: 4452027..4514362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPW97_RS20630 - 4452027..4452494 (-) 468 WP_154344449.1 hypothetical protein -
  RPW97_RS20635 - 4452505..4452825 (-) 321 WP_005411369.1 DUF6122 family protein -
  RPW97_RS20640 speA 4452863..4454752 (-) 1890 WP_005411370.1 arginine decarboxylase -
  RPW97_RS20645 speE 4454944..4455795 (+) 852 WP_005414731.1 polyamine aminopropyltransferase -
  RPW97_RS20650 - 4455913..4456818 (-) 906 WP_024957655.1 aspartyl/asparaginyl beta-hydroxylase domain-containing protein -
  RPW97_RS20655 - 4457253..4457912 (+) 660 WP_012481473.1 RIO1 family regulatory kinase/ATPase -
  RPW97_RS20660 - 4458068..4459012 (-) 945 WP_012481474.1 IS481-like element ISStma12 family transposase -
  RPW97_RS20665 - 4459221..4459559 (-) 339 WP_005411374.1 P-II family nitrogen regulator -
  RPW97_RS20670 - 4459715..4459966 (+) 252 WP_005411375.1 accessory factor UbiK family protein -
  RPW97_RS20675 arr 4460093..4460527 (+) 435 WP_044571000.1 NAD(+)--rifampin ADP-ribosyltransferase -
  RPW97_RS20680 - 4460520..4460966 (-) 447 WP_012481476.1 DUF4279 domain-containing protein -
  RPW97_RS20685 - 4461065..4461793 (-) 729 WP_012481477.1 hypothetical protein -
  RPW97_RS20690 - 4461852..4462247 (-) 396 WP_143566062.1 hypothetical protein -
  RPW97_RS20695 - 4462882..4463211 (-) 330 WP_012481479.1 hypothetical protein -
  RPW97_RS20700 - 4463450..4464052 (-) 603 WP_012481480.1 DUF998 domain-containing protein -
  RPW97_RS20705 - 4464680..4465036 (+) 357 WP_024957929.1 hypothetical protein -
  RPW97_RS20710 - 4465080..4465676 (+) 597 WP_049396745.1 hypothetical protein -
  RPW97_RS20715 - 4465777..4466439 (+) 663 WP_049396743.1 DUF1629 domain-containing protein -
  RPW97_RS20720 - 4466481..4469180 (+) 2700 WP_185695302.1 XVIPCD domain-containing protein -
  RPW97_RS20725 - 4469280..4470038 (-) 759 WP_049396741.1 carbon-nitrogen hydrolase family protein -
  RPW97_RS20730 comM 4470301..4471350 (+) 1050 WP_279703676.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RPW97_RS20735 - 4471443..4472444 (-) 1002 WP_071227697.1 patatin-like phospholipase family protein -
  RPW97_RS20740 - 4472492..4474732 (-) 2241 WP_164145931.1 ThiF family adenylyltransferase -
  RPW97_RS20745 - 4474729..4475889 (-) 1161 WP_071227700.1 MBL fold metallo-hydrolase -
  RPW97_RS20750 - 4476217..4477524 (-) 1308 WP_143048166.1 HEPN domain-containing protein -
  RPW97_RS20755 - 4478136..4478495 (+) 360 WP_071227703.1 hypothetical protein -
  RPW97_RS20760 - 4478640..4479122 (-) 483 WP_177179487.1 hypothetical protein -
  RPW97_RS20765 istA 4479177..4480676 (+) 1500 WP_003097546.1 IS21-like element ISPa36 family transposase -
  RPW97_RS20770 istB 4480663..4481454 (+) 792 WP_003097544.1 IS21-like element ISPa36 family helper ATPase IstB -
  RPW97_RS20775 - 4481489..4481725 (-) 237 WP_143048167.1 hypothetical protein -
  RPW97_RS20780 - 4481813..4481944 (-) 132 Protein_4076 IS3 family transposase -
  RPW97_RS20785 - 4482119..4482397 (-) 279 WP_071227721.1 helix-turn-helix transcriptional regulator -
  RPW97_RS20795 - 4483973..4484461 (+) 489 WP_229301142.1 cyclin-dependent kinase inhibitor 3 family protein -
  RPW97_RS20800 - 4484730..4485344 (-) 615 WP_071227704.1 hypothetical protein -
  RPW97_RS20805 - 4485407..4485682 (+) 276 WP_046984184.1 hypothetical protein -
  RPW97_RS20810 - 4485822..4486067 (-) 246 WP_046984183.1 hypothetical protein -
  RPW97_RS20815 - 4486109..4486750 (-) 642 WP_046984182.1 hypothetical protein -
  RPW97_RS20820 - 4486770..4487501 (-) 732 WP_295367469.1 HupE/UreJ family protein -
  RPW97_RS20825 - 4487498..4490635 (-) 3138 WP_071227706.1 CusA/CzcA family heavy metal efflux RND transporter -
  RPW97_RS20830 - 4490646..4491878 (-) 1233 WP_046984179.1 efflux RND transporter periplasmic adaptor subunit -
  RPW97_RS20835 - 4491875..4493125 (-) 1251 WP_176422360.1 TolC family protein -
  RPW97_RS20840 - 4493213..4493578 (-) 366 WP_046984178.1 hypothetical protein -
  RPW97_RS20845 - 4493682..4494332 (-) 651 WP_071227707.1 transmembrane anchor protein -
  RPW97_RS20850 - 4494356..4495012 (-) 657 WP_229301257.1 HupE/UreJ family protein -
  RPW97_RS20855 - 4495341..4495718 (-) 378 WP_143048168.1 hypothetical protein -
  RPW97_RS20860 - 4495815..4497149 (-) 1335 WP_046984174.1 MFS transporter -
  RPW97_RS20865 - 4497247..4500492 (-) 3246 WP_071227708.1 CusA/CzcA family heavy metal efflux RND transporter -
  RPW97_RS20870 - 4500492..4501637 (-) 1146 WP_279703664.1 efflux RND transporter periplasmic adaptor subunit -
  RPW97_RS20875 - 4501659..4502882 (-) 1224 WP_065428117.1 TolC family protein -
  RPW97_RS20880 - 4502975..4503532 (-) 558 WP_143048169.1 sigma-70 family RNA polymerase sigma factor -
  RPW97_RS20885 - 4503548..4503994 (-) 447 WP_046984169.1 periplasmic heavy metal sensor -
  RPW97_RS20890 - 4503994..4504278 (-) 285 WP_046984168.1 CnrY/NccY family anti-sigma factor -
  RPW97_RS20895 - 4504457..4506409 (-) 1953 WP_071227722.1 ATP-binding protein -
  RPW97_RS20900 - 4507418..4508530 (-) 1113 WP_177179488.1 site-specific integrase -
  RPW97_RS20905 - 4508770..4509216 (-) 447 WP_046984166.1 hypothetical protein -
  RPW97_RS20910 - 4509252..4510292 (-) 1041 WP_164145927.1 tyrosine-type recombinase/integrase -
  RPW97_RS20915 - 4511174..4512976 (-) 1803 WP_143048170.1 hypothetical protein -
  RPW97_RS20920 - 4513343..4513816 (+) 474 Protein_4103 ATP-binding protein -
  RPW97_RS20925 - 4513976..4514362 (-) 387 WP_049396582.1 hypothetical protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 36878.44 Da        Isoelectric Point: 7.2619

>NTDB_id=893467 RPW97_RS20730 WP_279703676.1 4470301..4471350(+) (comM) [Stenotrophomonas maltophilia strain 503]
MSLALVHSRARAGVDAPLVRVEVHLSGGLPVTQIVGLAETSVRESRERVRAALLCARFDFPQRRITLNLAPADLPKEGGR
YDLAIALGILAASGQVDPQSLLQYEFLGELGLTGELRPVAGALPAAIAAAEAGRILVVPPGNAAEAALAEHADVRVARTL
LECCAGLGNPRLLPPVERVDTTPLPLPDLADVRGQAHARRALEVAAAGGHHLLLIGSPGCGKTLLASRLPSLLPDTEETE
ALQLAAIASVSGEGLDPRRWRQRPFRAPHHSASAAALVGGGNPPCPGEISLAHHGVLFLDELPEWNRSALETLREPLESG
HIRIARAARSVQYPARFQLVAAFVRNPTM

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=893467 RPW97_RS20730 WP_279703676.1 4470301..4471350(+) (comM) [Stenotrophomonas maltophilia strain 503]
ATGAGCCTGGCGCTGGTCCACAGCCGTGCCCGCGCCGGGGTCGATGCCCCGCTGGTGCGGGTGGAAGTGCATCTCTCTGG
CGGCCTGCCTGTCACACAGATCGTTGGCCTGGCCGAAACCAGCGTGCGCGAATCCCGCGAGCGTGTGCGTGCCGCCCTGC
TCTGCGCGCGCTTCGACTTTCCGCAGCGGCGCATCACGTTGAACCTCGCGCCCGCCGACCTGCCCAAGGAAGGTGGTCGC
TACGACCTGGCGATTGCCTTGGGCATTCTTGCGGCCAGCGGCCAGGTCGATCCACAGTCGCTGCTGCAGTACGAATTCCT
GGGCGAGCTTGGCCTGACCGGTGAGCTGCGGCCGGTGGCCGGTGCACTGCCGGCCGCGATTGCCGCCGCTGAAGCCGGTC
GCATCCTGGTGGTACCGCCAGGGAATGCCGCAGAGGCAGCTTTGGCCGAGCACGCCGATGTGCGTGTAGCGCGTACGCTG
CTGGAGTGCTGCGCCGGGTTGGGCAATCCGCGCCTGTTGCCGCCCGTGGAACGCGTGGACACGACACCGTTGCCACTACC
CGATCTGGCCGACGTGCGCGGGCAGGCGCATGCACGACGCGCGTTGGAAGTGGCCGCCGCCGGTGGGCACCATCTGTTGC
TGATCGGCAGCCCTGGCTGTGGCAAGACGCTGTTGGCCTCGCGCCTGCCCAGCCTGTTGCCGGATACCGAAGAGACTGAG
GCGCTGCAGCTGGCCGCGATTGCATCGGTGAGTGGCGAAGGACTGGACCCGCGACGGTGGCGGCAGCGGCCCTTTCGGGC
ACCGCATCACAGTGCCAGTGCGGCGGCGCTGGTGGGTGGGGGCAACCCGCCCTGCCCCGGTGAGATATCACTGGCCCACC
ATGGAGTCCTCTTCCTTGACGAGCTTCCAGAGTGGAACCGCAGCGCACTGGAAACCCTGCGCGAGCCACTCGAGTCCGGC
CACATCCGCATCGCCCGCGCAGCACGCAGCGTGCAGTACCCCGCGCGGTTCCAACTGGTGGCCGCTTTTGTGAGAAATCC
CACCATGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-343)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.215

100

0.57
  comM Glaesserella parasuis strain SC1401

56.091

100

0.567
  comM Haemophilus influenzae Rd KW20

54.802

100

0.556
  comM Legionella pneumophila strain ERS1305867

55.143

100

0.553
  comM Legionella pneumophila str. Paris

55.143

100

0.553
  comM Vibrio campbellii strain DS40M4

54.857

100

0.55
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.098

100

0.461