Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   P4826_RS11790 Genome accession   NZ_CP136921
Coordinates   2422377..2423915 (+) Length   512 a.a.
NCBI ID   WP_317700584.1    Uniprot ID   -
Organism   Diaphorobacter limosus strain Y-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2417377..2428915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4826_RS11770 (P4826_11770) glcF 2418090..2419328 (-) 1239 WP_317700580.1 glycolate oxidase subunit GlcF -
  P4826_RS11775 (P4826_11775) glcE 2419360..2420469 (-) 1110 WP_317700581.1 glycolate oxidase subunit GlcE -
  P4826_RS11780 (P4826_11780) amt 2420570..2421874 (-) 1305 WP_317700582.1 ammonium transporter -
  P4826_RS11785 (P4826_11785) - 2421897..2422235 (-) 339 WP_317700583.1 P-II family nitrogen regulator -
  P4826_RS11790 (P4826_11790) comM 2422377..2423915 (+) 1539 WP_317700584.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  P4826_RS11795 (P4826_11795) - 2423959..2425548 (-) 1590 WP_317700585.1 ATP-binding cassette domain-containing protein -
  P4826_RS11800 (P4826_11800) - 2425545..2427440 (-) 1896 WP_317700586.1 ABC transporter permease -
  P4826_RS11805 (P4826_11805) - 2427459..2428655 (-) 1197 WP_317700587.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53766.55 Da        Isoelectric Point: 8.3955

>NTDB_id=893439 P4826_RS11790 WP_317700584.1 2422377..2423915(+) (comM) [Diaphorobacter limosus strain Y-1]
MGLALVQSRALLGLQAPAVTVEVHLANGLPSFALVGLADVEVKEARERVRSALQNAGLEFPSNKKITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAARLAGWEFAGELSLSGQLRPVRGALATSLALHGLEPPVRMVLPPGSAEEAALVPSAQIWRA
RHLLDVVRQFLPAGNNSEPEPDDDGWQRLQPAPPAVHTDGPDLADVKGQAAAKRALEIAAAGGHGLLLVGPPGSGKSMLA
QRFAGLLPPMSVQQALQSAAIASLAGRFTGAQWMQRITASPHHSCSAIALVGGGSPPRPGEISLAHEGVLFLDEFPEFAR
SALEALREPLESGRITISRAAQRAEFPARFQLIAAMNPCPCGFAGSGQRACRCTPDQVARYQGKLSGPLLDRIDLHVEVP
QLPAADLLNAPAGEASSAVRARVAQAHARALARQGQPNQALQGQQLDQMAALDDAAARFLQTAAARLAWSARGTHRALKV
ARTIADLAGSEHVTVAHVAEAMQYRRVLRTTV

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=893439 P4826_RS11790 WP_317700584.1 2422377..2423915(+) (comM) [Diaphorobacter limosus strain Y-1]
ATGGGTCTTGCTTTGGTGCAAAGCCGCGCCCTGCTGGGCCTGCAGGCACCCGCCGTCACCGTCGAGGTGCATCTGGCCAA
TGGCCTGCCCAGCTTTGCGCTGGTCGGCCTGGCCGATGTCGAGGTCAAGGAGGCGCGCGAGCGCGTGCGCTCGGCGCTGC
AGAACGCGGGACTGGAGTTCCCCAGCAACAAGAAGATCACCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGACTCGGGG
CGCTTCGACCTGCCGATCGCGCTGGGCATCCTGGCCGCCAGCGGGCAGATTGATGCGGCGCGCCTGGCCGGCTGGGAGTT
TGCCGGCGAGCTGTCGCTGTCGGGCCAGCTGCGGCCGGTGCGCGGCGCGCTGGCCACCAGCCTGGCCCTGCATGGCCTGG
AGCCGCCTGTGCGCATGGTGCTGCCGCCGGGCAGCGCCGAAGAAGCCGCCCTGGTGCCCAGCGCGCAGATCTGGCGCGCA
CGCCACCTGCTGGACGTGGTGCGGCAGTTTCTGCCCGCCGGCAACAATTCCGAGCCAGAGCCCGACGACGACGGCTGGCA
GCGCCTGCAGCCGGCCCCGCCCGCCGTCCACACCGATGGCCCGGATCTGGCCGATGTCAAGGGCCAGGCCGCCGCCAAGC
GCGCGCTGGAGATCGCCGCCGCCGGCGGCCACGGCCTGCTGCTGGTGGGCCCGCCGGGCTCGGGCAAGTCCATGCTGGCG
CAGCGCTTTGCCGGCCTGCTGCCGCCCATGAGCGTGCAGCAGGCGCTGCAGAGCGCGGCCATTGCCAGCCTGGCCGGGCG
CTTCACCGGCGCGCAGTGGATGCAGCGCATCACCGCCAGCCCGCACCACAGCTGCAGCGCGATTGCCCTGGTCGGCGGCG
GCTCGCCGCCCAGGCCGGGCGAGATCTCGCTGGCGCATGAGGGCGTGCTATTCCTCGATGAATTCCCCGAATTTGCCCGC
AGCGCCCTGGAAGCCCTGCGCGAGCCGCTGGAGAGCGGGCGCATCACCATATCGCGCGCGGCGCAGCGCGCGGAGTTCCC
GGCGCGCTTTCAGCTCATCGCCGCCATGAACCCCTGCCCCTGCGGCTTTGCCGGGTCGGGGCAGCGCGCCTGCCGCTGCA
CGCCCGACCAGGTGGCGCGCTACCAGGGCAAGCTGTCCGGCCCGCTGCTCGATCGCATAGACCTGCATGTCGAGGTGCCG
CAGCTGCCTGCCGCCGACCTGCTGAATGCCCCCGCCGGCGAGGCCAGCAGCGCAGTGCGCGCGCGCGTGGCCCAGGCGCA
CGCCCGCGCCCTGGCGCGCCAGGGCCAGCCCAACCAGGCACTGCAGGGCCAGCAGCTGGACCAGATGGCCGCGCTGGACG
ATGCCGCCGCGCGCTTTCTGCAGACCGCCGCCGCGCGCCTGGCCTGGTCGGCACGCGGCACGCACCGCGCGCTGAAGGTG
GCGCGCACGATTGCCGACCTGGCCGGGTCGGAGCATGTGACGGTGGCCCATGTGGCCGAGGCCATGCAATACCGGCGGGT
GTTGCGCACTACTGTTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)

Subunit ChlI of Mg-chelatase (ChlI)

(21-130)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.468

99.805

0.514
  comM Haemophilus influenzae Rd KW20

50.485

100

0.508
  comM Glaesserella parasuis strain SC1401

50.196

99.609

0.5
  comM Vibrio campbellii strain DS40M4

49.515

100

0.498
  comM Legionella pneumophila str. Paris

48.538

100

0.486
  comM Legionella pneumophila strain ERS1305867

48.538

100

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.618

100

0.422