Detailed information NTG0893431

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: AAIS09_RS01275
• Genome accession: NZ_CP154595
• Coordinates: 230484..231482 (+)
• Length: 332 a.a.
• NCBI ID: WP_369917149.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain serotype 4
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 225484..236482

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAIS09_RS01255 (AAIS09_01250)	leuS	225625..228126 (+)	2502	WP_369917146.1	leucine--tRNA ligase	-
AAIS09_RS01260 (AAIS09_01255)	-	228320..229015 (+)	696	WP_369917147.1	GNAT family N-acetyltransferase	-
AAIS09_RS01265 (AAIS09_01260)	-	229027..229443 (+)	417	WP_000628392.1	GNAT family N-acetyltransferase	-
AAIS09_RS01270 (AAIS09_01265)	-	230258..230350 (-)	93	WP_000970381.1	type I toxin-antitoxin system Fst family toxin	-
AAIS09_RS01275 (AAIS09_01270)	ruvB	230484..231482 (+)	999	WP_369917149.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
AAIS09_RS01280 (AAIS09_01275)	-	231463..232035 (+)	573	Protein_248	nucleotidyltransferase family protein	-
AAIS09_RS01285 (AAIS09_01280)	-	232266..233024 (+)	759	WP_000466719.1	isoprenyl transferase	-
AAIS09_RS01290 (AAIS09_01285)	-	233033..233836 (+)	804	WP_000189857.1	phosphatidate cytidylyltransferase	-
AAIS09_RS01295 (AAIS09_01290)	eeP	233858..235117 (+)	1260	WP_369917152.1	RIP metalloprotease RseP	Regulator

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37228.67 Da
• Isoelectric Point: 4.5053

>NTDB_id=893431 AAIS09_RS01275 WP_369917149.1 230484..231482(+) (ruvB) [Streptococcus pneumoniae strain serotype 4]
MGRILDNEIMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVID
DIITDKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGYEYSEK

Nucleotide

• Length: 999 bp

>NTDB_id=893431 AAIS09_RS01275 WP_369917149.1 230484..231482(+) (ruvB) [Streptococcus pneumoniae strain serotype 4]
ATGGGTAGAATTTTAGATAATGAGATAATGGGGGATGAGGAGTTAGTAGAACGCACGCTCCGTCCTCAGTATTTACGTGA
ATATATCGGACAGGATAAGGTCAAGGACCAGCTACAAATCTTTATTGAAGCTGCAAAAATGCGGGATGAAGCGCTGGATC
ATGTGCTCTTATTTGGGCCTCCAGGTCTCGGGAAAACGACCATGGCCTTTGTTATTGCCAACGAACTGGGAGTCAATCTT
AAGCAGACGTCGGGTCCAGTCATTGAAAAAGCCGGAGATCTGGTAGCTATTTTGAATGAGTTAGAGCCTGGGGATGTCCT
TTTTATTGATGAGATCCATCGTTTGCCAATGTCAGTGGAAGAGGTACTTTATAGTGCCATGGAGGACTTCTACATAGATA
TTATGATTGGGGCTGGTGAGGGTAGTCGTAGTGTTCATTTGGAGTTACCACCTTTTACCTTGATTGGTGCGACGACTCGG
GCTGGTATGCTCTCCAATCCGCTACGGGCACGTTTTGGGATTACAGGTCATATGGAGTATTATGCCCATGCTGACTTGAC
AGAAATTGTCGAGCGGACGGCAGATATTTTTGAGATGGAAATCACTCATGAGGCAGCATCTGAGTTGGCCCTACGTAGTC
GTGGAACCCCTCGTATTGCCAATCGTCTCCTCAAGCGCGTGCGCGATTTTGCCCAGATAATGGGGAATGGGGTAATTGAT
GATATTATTACCGATAAGGCTTTGACTATGCTGGATGTTGACCATGAAGGTTTGGACTATGTGGATCAAAAAATCCTTCG
CACCATGATTGAGATGTACGGTGGTGGCCCTGTCGGATTAGGAACTCTTTCTGTCAATATTGCCGAGGAGCGTGAGACTG
TAGAAGACATGTATGAGCCTTACTTGATTCAAAAAGGTTTTATCATGCGGACACGGTCTGGACGGGTGGCGACTGCTAAG
GCATATGAGCACTTAGGTTATGAATACAGTGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	99.398	100	0.994
ruvB	Streptococcus pneumoniae D39	99.398	100	0.994
ruvB	Streptococcus pneumoniae TIGR4	98.494	100	0.985
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.429	98.193	0.593
ruvB	Helicobacter pylori 26695	50.774	97.289	0.494
ruvB	Synechocystis sp. PCC 6803	49.84	94.277	0.47