Detailed information NTG0893432

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: P4826_RS08730
• Genome accession: NZ_CP136921
• Coordinates: 1809621..1810763 (+)
• Length: 380 a.a.
• NCBI ID: WP_317703451.1
• Uniprot ID: -
• Organism: Diaphorobacter limosus strain Y-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1804621..1815763

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P4826_RS08705 (P4826_08705)	-	1805004..1805318 (+)	315	WP_317703446.1	BON domain-containing protein	-
P4826_RS08710 (P4826_08710)	coaD	1805515..1806003 (-)	489	WP_317703447.1	pantetheine-phosphate adenylyltransferase	-
P4826_RS08715 (P4826_08715)	rsmD	1806151..1806768 (-)	618	WP_317703448.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
P4826_RS08720 (P4826_08720)	-	1806765..1808123 (-)	1359	WP_317703449.1	pitrilysin family protein	-
P4826_RS08725 (P4826_08725)	-	1808139..1809590 (-)	1452	WP_317703450.1	pitrilysin family protein	-
P4826_RS08730 (P4826_08730)	pilA	1809621..1810763 (+)	1143	WP_317703451.1	signal recognition particle-docking protein FtsY	Machinery gene
P4826_RS08735 (P4826_08735)	cutA	1810765..1811091 (-)	327	WP_317703452.1	divalent-cation tolerance protein CutA	-
P4826_RS08740 (P4826_08740)	-	1811104..1812267 (-)	1164	WP_317703453.1	ABC transporter substrate-binding protein	-
P4826_RS08745 (P4826_08745)	-	1812358..1813422 (-)	1065	WP_317703454.1	alcohol dehydrogenase	-
P4826_RS08750 (P4826_08750)	rpoH	1813632..1814567 (+)	936	WP_317703455.1	RNA polymerase sigma factor RpoH	-
P4826_RS08755 (P4826_08755)	-	1814647..1815654 (+)	1008	WP_317703456.1	tripartite tricarboxylate transporter substrate-binding protein	-

Sequence

Protein

• Length: 380 a.a.
• Molecular weight: 40157.79 Da
• Isoelectric Point: 5.3228

>NTDB_id=893432 P4826_RS08730 WP_317703451.1 1809621..1810763(+) (pilA) [Diaphorobacter limosus strain Y-1]
MFSFFKKKSTAPAEAPIETPAAPPPDTETSASGGAMGWLRKSFGAAPADREAPADQEAPALPATTDSTPPTVALPTPKPE
GERQGWMERLKSGLRKTGSSIATVFTGTQINDALYEELEDALLMADTGVKATQHLLDDLKRRVKDSKTTEPAAVKALLAD
ALADLLKPLEKPLVIGEHQPTVIMVAGVNGAGKTTSIGKLTKHLADHGETVLLAAADTFRAAAREQLGVWATRNTVEIIS
QEGGDPAAVSFDAVTAGRARGKDVVLVDTAGRLPTQLHLMEELKKIRRVVTKAEASAPHEVLLVIDGNTGQNALTQVRTF
DDALQLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKVEDLETFNAREFAQALLA

Nucleotide

• Length: 1143 bp

>NTDB_id=893432 P4826_RS08730 WP_317703451.1 1809621..1810763(+) (pilA) [Diaphorobacter limosus strain Y-1]
ATGTTCAGTTTTTTCAAGAAAAAATCCACTGCGCCCGCCGAGGCGCCCATCGAGACGCCCGCCGCGCCGCCGCCAGACAC
CGAGACCAGCGCCAGCGGCGGCGCCATGGGCTGGCTGCGCAAGTCCTTTGGCGCAGCGCCCGCTGACCGTGAGGCGCCCG
CCGACCAGGAAGCACCGGCCCTGCCGGCCACCACCGACAGCACGCCGCCCACCGTCGCCCTGCCCACCCCCAAGCCCGAG
GGCGAGCGCCAGGGCTGGATGGAGCGCCTCAAATCCGGCCTGCGCAAGACCGGCAGCTCGATTGCCACGGTCTTCACCGG
CACGCAGATCAACGACGCGCTGTACGAGGAGCTGGAGGATGCGCTGCTGATGGCCGACACCGGCGTCAAGGCCACGCAGC
ACCTGCTCGATGACCTGAAGCGCCGCGTGAAGGACAGCAAGACGACAGAGCCCGCCGCCGTCAAGGCGCTGCTGGCCGAT
GCCCTGGCAGACCTGCTCAAGCCGCTGGAAAAGCCGCTGGTCATAGGCGAACACCAGCCCACGGTGATCATGGTGGCGGG
CGTGAACGGCGCGGGCAAGACTACGTCGATAGGCAAGCTCACCAAGCATCTGGCCGACCATGGCGAGACGGTGCTGCTGG
CCGCGGCCGACACCTTCCGCGCGGCAGCGCGCGAGCAGCTGGGCGTATGGGCCACGCGCAACACCGTGGAAATCATCAGC
CAGGAGGGCGGCGACCCCGCCGCCGTGAGTTTTGACGCCGTCACAGCCGGCCGCGCACGCGGCAAGGACGTGGTGCTGGT
GGACACCGCCGGGCGCCTGCCCACACAGCTGCACCTGATGGAGGAGCTTAAAAAAATCCGCCGCGTGGTCACCAAGGCCG
AGGCCAGCGCCCCGCACGAGGTGCTGTTGGTAATCGACGGGAACACCGGCCAGAACGCCCTGACCCAGGTGCGCACCTTT
GACGACGCACTGCAACTCACCGGCCTGATCGTCACCAAACTGGATGGCACGGCCAAGGGCGGCGTGCTCGCGGCCATCGC
CCAGGAGCGGCCGGTGCCGGTCTATTTCATCGGCGTGGGCGAGAAGGTGGAAGACCTGGAAACCTTCAACGCACGCGAGT
TTGCGCAGGCGCTGCTGGCCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (180-379)

• SRP54-type protein, helical bundle domain (SRP54_N) (99-162)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	50.721	100	0.555