Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCU42_RS02105 Genome accession   NZ_AP024905
Coordinates   453606..454139 (-) Length   177 a.a.
NCBI ID   WP_077337393.1    Uniprot ID   A0A1R4LTH3
Organism   Vibrio ruber strain LMG 23124     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 448606..459139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU42_RS02100 metH 449814..453488 (+) 3675 WP_077337394.1 methionine synthase -
  OCU42_RS02105 ssb 453606..454139 (-) 534 WP_077337393.1 single-stranded DNA-binding protein Machinery gene
  OCU42_RS02110 qstR 454412..455059 (+) 648 WP_077337392.1 response regulator transcription factor Regulator
  OCU42_RS02115 galU 455176..456084 (+) 909 WP_077337391.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCU42_RS02120 uvrA 456223..459045 (+) 2823 WP_077337390.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19483.44 Da        Isoelectric Point: 5.2252

>NTDB_id=89335 OCU42_RS02105 WP_077337393.1 453606..454139(-) (ssb) [Vibrio ruber strain LMG 23124]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSETWRDKTTGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQERYTTEVVVQGFNGVMQMLGGRQGAGSGGQAQSGMQSQQQNSGWGQPQQPQSQAAHQQPQQQSAP
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=89335 OCU42_RS02105 WP_077337393.1 453606..454139(-) (ssb) [Vibrio ruber strain LMG 23124]
ATGGCAAGCCGTGGAGTAAACAAAGTTATATTAGTTGGGAACCTGGGAAGTGATCCTGAAGTCCGTTACATGCCAAGTGG
CGGTGCAGTTGCGAACATCACGATTGCGACATCAGAAACATGGCGCGATAAAACGACGGGTGAGCAAAGAGAAAAAACCG
AATGGCATCGTGTTGCCCTGTTCGGAAAATTGGCAGAAGTCGCCGGAGAATATCTGCGTAAAGGTTCTCAGGTATATATT
GAAGGGCAACTGCAAACACGGAAATGGCAAGATCAAAGCGGTCAGGAGCGTTATACAACTGAAGTGGTTGTTCAAGGGTT
TAACGGTGTGATGCAAATGCTGGGTGGACGTCAGGGAGCAGGGTCTGGTGGCCAAGCTCAGTCCGGGATGCAGTCTCAAC
AACAAAATAGTGGTTGGGGACAACCGCAACAGCCTCAGTCCCAAGCGGCTCATCAGCAACCACAGCAACAATCTGCACCG
CAACCACAATACAATGAGCCACCAATGGATTTTGACGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R4LTH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.663

100

0.825
  ssb Glaesserella parasuis strain SC1401

52.85

100

0.576
  ssb Neisseria gonorrhoeae MS11

46.111

100

0.469
  ssb Neisseria meningitidis MC58

45.604

100

0.469

Multiple sequence alignment