Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCU42_RS02110 Genome accession   NZ_AP024905
Coordinates   454412..455059 (+) Length   215 a.a.
NCBI ID   WP_077337392.1    Uniprot ID   -
Organism   Vibrio ruber strain LMG 23124     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 449412..460059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU42_RS02100 metH 449814..453488 (+) 3675 WP_077337394.1 methionine synthase -
  OCU42_RS02105 ssb 453606..454139 (-) 534 WP_077337393.1 single-stranded DNA-binding protein Machinery gene
  OCU42_RS02110 qstR 454412..455059 (+) 648 WP_077337392.1 response regulator transcription factor Regulator
  OCU42_RS02115 galU 455176..456084 (+) 909 WP_077337391.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCU42_RS02120 uvrA 456223..459045 (+) 2823 WP_077337390.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25305.49 Da        Isoelectric Point: 9.9392

>NTDB_id=89336 OCU42_RS02110 WP_077337392.1 454412..455059(+) (qstR) [Vibrio ruber strain LMG 23124]
MKRSNYSRMLYILYPDNQEPPTLYRQIEVALGQILPKIQPRQFMLSHQTDRHKILLFDYQHKEVLLSRLNMYNALDLCLE
TVVINVDKRPRTEELLQLGNLKGLFYRSDPIELIIAALHEIREGRIYLPRHICGQLLHYYRHLFNNKHISAAISLTSREL
EILRCLKTGATNTQIADNLFISEFTVKSHLYQIFKKISVKNRTQATTWAKQNLVS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=89336 OCU42_RS02110 WP_077337392.1 454412..455059(+) (qstR) [Vibrio ruber strain LMG 23124]
ATGAAAAGATCAAATTACAGCAGAATGCTTTATATCCTTTATCCCGATAATCAAGAACCTCCAACGCTCTATCGTCAAAT
CGAGGTGGCGCTGGGACAGATACTCCCGAAAATTCAACCTCGGCAATTTATGCTGTCTCATCAAACCGATCGGCACAAAA
TACTCCTGTTTGATTATCAACATAAGGAGGTATTGCTATCCCGTTTGAACATGTATAACGCACTGGATTTATGCCTCGAA
ACGGTTGTCATCAATGTTGATAAACGCCCGAGAACAGAAGAACTTCTCCAGTTAGGCAACCTGAAAGGACTCTTCTATCG
TAGTGATCCGATTGAACTGATTATTGCTGCACTCCATGAGATCCGAGAGGGGCGTATTTATTTACCACGACATATTTGTG
GGCAGCTCCTTCATTACTATCGCCATTTATTTAACAATAAACATATCAGTGCAGCGATATCTCTGACTTCCAGAGAGTTG
GAAATTCTGCGTTGTCTGAAAACAGGGGCAACAAATACACAAATCGCAGATAACCTGTTCATCAGTGAGTTCACGGTTAA
ATCACATCTGTATCAAATTTTTAAGAAAATATCGGTAAAAAACCGAACTCAAGCGACAACATGGGCAAAACAAAATCTAG
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

48.387

100

0.488
  qstR Vibrio campbellii strain DS40M4

46.296

100

0.465
  qstR Vibrio parahaemolyticus RIMD 2210633

44.495

100

0.451

Multiple sequence alignment