Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R1T29_RS15890 Genome accession   NZ_CP136903
Coordinates   3418878..3420401 (-) Length   507 a.a.
NCBI ID   WP_203505188.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain X1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3413878..3425401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T29_RS15870 (R1T29_15870) - 3415160..3416146 (+) 987 WP_258496337.1 serine/threonine protein kinase -
  R1T29_RS15875 (R1T29_15875) - 3416181..3416783 (+) 603 WP_005454748.1 thiol:disulfide interchange protein DsbA/DsbL -
  R1T29_RS15880 (R1T29_15880) - 3416825..3417703 (-) 879 WP_020904428.1 acyltransferase -
  R1T29_RS15885 (R1T29_15885) - 3417865..3418821 (+) 957 WP_069493497.1 DUF2860 domain-containing protein -
  R1T29_RS15890 (R1T29_15890) comM 3418878..3420401 (-) 1524 WP_203505188.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R1T29_RS15895 (R1T29_15895) ilvG 3420866..3422512 (+) 1647 WP_203505186.1 acetolactate synthase 2 catalytic subunit -
  R1T29_RS15900 (R1T29_15900) ilvM 3422523..3422807 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  R1T29_RS15905 (R1T29_15905) ilvE 3422820..3423758 (+) 939 WP_203505184.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54971.10 Da        Isoelectric Point: 9.0357

>NTDB_id=893312 R1T29_RS15890 WP_203505188.1 3418878..3420401(-) (comM) [Vibrio parahaemolyticus strain X1]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDRLKNYEFVGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPSLPKGTLAEGGDR
GEPTELVKERVSLARESMLNRNGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAEQ
IKRPHLAEALGYRAMDRLLKQLAAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=893312 R1T29_RS15890 WP_203505188.1 3418878..3420401(-) (comM) [Vibrio parahaemolyticus strain X1]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCGCCGTCAGTTAGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA
TCAATTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCTCCGGCGGATTTACCTAAAGAAGGCGGTCGT
TTTGATTTGCCTATCGCATTGGGTATTTTAGCGGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTGT
TGGCGAATTAGCTCTGTCTGGAGGATTAAGACCTGTCAAAGGCGTGCTTCCAGCCGCGTTGGCTGCAAGTAAAGTAGGAC
GTCATTTGGTGGTGCCTCATGTCAATGGCGATCAAGCGGCGCTGGTGGGCAAAGAGCAACATAAGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAGCA
TGGTCGAGATCTACAAGACATCATTGGCCAGCAACAAGGCAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAACC
TACTTTTTCTTGGTCCTCCTGGTACAGGAAAAACCATGCTGGCATCGCGTTTATGCGACTTACTGCCGGAGATGAGCGAC
GAAGAAGCGATGGAAACGGCTTCAGTCGCATCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAAGTCGCGTCCGTT
TCGTGCGCCGCACCATTCCAGTTCGATGGCTGCATTAGTTGGTGGTGGCTCGGTGCCAAGACCGGGAGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAATGCCGGAGTTTGACCGTAAAGTGTTGGACTCGTTACGAGAACCACTGGAA
TCGGGTGAGATCATCATTTCTCGCGCACAAGGAAAAACGCGTTTTCCTGCTCGTTTTCAGCTGGTGGGCGCGTTGAATCC
AAGCCCAACTGGCTATTACGAAGGGAATCAAGCTCGCACTAACCCTCAAGCTATTTTGCGTTACTTAGGTCGTTTATCGG
GACCGCTTCTCGACCGTTTTGATATGTCGTTAGAAATTCCATCCTTACCGAAAGGCACGTTGGCGGAAGGTGGTGATCGA
GGTGAGCCCACGGAACTCGTCAAAGAGCGCGTCAGTCTTGCTCGTGAGAGCATGCTTAATCGAAACGGCAAAGTAAACGC
ACTGCTCGGCAGCCGTGAGATTGAGGCATTTTGCCCATTGCAAAAAAGCGATGCGGAATTTCTCGAAACTGCACTGCATC
GGCTGGGGTTATCGATTCGTGCCTATCATCGCATCATTAAAGTGGCCCGTACGATAGCGGATTTAGAAGGTGCTGAGCAG
ATTAAGCGGCCTCATCTGGCGGAAGCGCTCGGGTATCGCGCGATGGACCGATTGCTGAAACAACTCGCGGCTCAAGCCGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

93.886

100

0.939
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

66.469

100

0.665
  comM Glaesserella parasuis strain SC1401

64.51

100

0.649
  comM Legionella pneumophila str. Paris

49.798

97.83

0.487
  comM Legionella pneumophila strain ERS1305867

49.798

97.83

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.442