Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCU42_RS00200 Genome accession   NZ_AP024905
Coordinates   39321..40844 (+) Length   507 a.a.
NCBI ID   WP_077335558.1    Uniprot ID   A0A1R4LJD4
Organism   Vibrio ruber strain LMG 23124     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 34321..45844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU42_RS00185 - 35943..36884 (-) 942 WP_077335552.1 branched-chain amino acid transaminase -
  OCU42_RS00190 ilvM 36895..37179 (-) 285 WP_077335554.1 acetolactate synthase 2 small subunit -
  OCU42_RS00195 ilvG 37192..38838 (-) 1647 WP_077335556.1 acetolactate synthase 2 catalytic subunit -
  OCU42_RS00200 comM 39321..40844 (+) 1524 WP_077335558.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCU42_RS00205 - 40979..41857 (+) 879 WP_077335605.1 acyltransferase -
  OCU42_RS00210 - 41980..42579 (-) 600 WP_077335560.1 thiol:disulfide interchange protein DsbA/DsbL -
  OCU42_RS00215 - 42731..43717 (-) 987 WP_077335562.1 serine/threonine protein kinase -
  OCU42_RS00220 - 43900..45789 (-) 1890 WP_077335564.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55325.47 Da        Isoelectric Point: 7.1019

>NTDB_id=89329 OCU42_RS00200 WP_077335558.1 39321..40844(+) (comM) [Vibrio ruber strain LMG 23124]
MGLAIIHSRASVGVEAPLVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIIHSRFEFPPKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIISDHLANYEFLGELALSGQLRTVKGVLPAALAAGLAERALVVPHENGDQAALVGQGQHYSAGSL
QEVCQALCGDLSLGLYQSQPEIKQPTSSRDLQDIIGQQQGKRALEIAAAGHHNLLFLGPPGTGKTMLASRLCDLLPEMSN
EEAMETAAVASLTQQDIHQYNWKQRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERRVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGQESRINPQHILRYLSRLSGPLLDRFDLSIEIPALPKGMLAEGGGR
GETTQAVRERVLRARELMLRLRGKANSLLTSREIETFCPLVKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLAEEEH
IQRAHLAEALGYRAMDRLLKQLTIQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=89329 OCU42_RS00200 WP_077335558.1 39321..40844(+) (comM) [Vibrio ruber strain LMG 23124]
ATGGGGTTAGCAATCATTCATAGTCGGGCAAGTGTCGGGGTCGAAGCACCATTGGTGACTGTTGAAGTTCACATTAGTAA
TGGGATGCCCGGATTTACACTGGTGGGGTTACCGGAAACCACCGTCAAGGAATCACGGGATCGGGTTCGCAGTGCGATTA
TCCATTCCCGGTTTGAATTTCCCCCCAAGCGTATCACGGTCAATCTGGCACCGGCCGATTTACCCAAGGAGGGCGGGCGT
TTTGATCTGCCTATTGCTTTAGGCATTCTGGCTGCCTCGGATCAAATCATCTCGGATCATCTGGCAAATTATGAATTTTT
AGGGGAGTTAGCGTTATCCGGTCAGTTGCGAACTGTGAAAGGGGTATTACCCGCAGCTTTGGCTGCCGGGCTGGCTGAGC
GTGCTTTGGTTGTGCCGCATGAGAATGGTGATCAGGCGGCCTTAGTCGGGCAAGGTCAGCATTACTCTGCCGGGAGTTTG
CAGGAAGTCTGTCAGGCGTTGTGCGGCGATTTGTCACTGGGGTTGTATCAGTCTCAGCCCGAGATTAAGCAACCGACGTC
TTCGCGGGATTTGCAGGATATTATTGGCCAGCAACAGGGCAAGCGTGCTTTAGAAATTGCAGCAGCCGGTCATCATAATT
TACTGTTTCTCGGGCCTCCGGGAACGGGGAAAACGATGCTGGCTTCCCGATTGTGTGATTTGCTGCCTGAGATGAGTAAT
GAAGAAGCCATGGAAACGGCAGCGGTTGCATCGCTGACGCAGCAGGACATTCATCAGTACAACTGGAAACAACGACCATT
CCGTGCACCGCATCATTCCAGTTCGATGGCCGCTTTGGTCGGCGGTGGTTCGATTCCTCGTCCCGGTGAAATCTCGCTGG
CTCATAACGGATTACTTTTTCTTGATGAGATGCCGGAGTTTGAACGTCGGGTGCTCGATTCATTACGTGAACCGTTGGAA
TCGGGAGAGATTGTCATTTCCCGGGCGCAAGGTAAAACCCGTTTCCCGGCGCGCTTTCAGTTAGTCGGTGCGTTGAATCC
AAGCCCGACCGGCTATTATGAAGGCCAGGAGAGCCGGATCAATCCGCAACACATTCTCCGTTATCTGAGCCGGTTATCAG
GGCCGTTATTGGATCGGTTTGACCTGTCTATTGAAATCCCGGCTTTACCTAAAGGCATGCTTGCTGAAGGCGGTGGTCGG
GGAGAGACCACACAGGCGGTTCGTGAGCGAGTGCTTCGGGCTAGAGAGTTAATGCTGCGTTTACGGGGGAAAGCGAATTC
GCTGCTCACCAGCCGGGAAATTGAAACTTTCTGCCCGCTGGTAAAATCCGATGCCGAGTTTCTGGAAAACGCATTGCACC
GTCTGGGTCTGTCTATTCGTGCTTATCACCGCATCATTAAAGTTGCCCGCACTATTGCTGATTTGGCAGAAGAGGAACAT
ATACAGCGGGCACATCTGGCAGAAGCGTTGGGATATCGTGCGATGGATCGATTATTGAAGCAACTGACGATACAAGCGGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R4LJD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.037

100

0.83
  comM Vibrio campbellii strain DS40M4

81.657

100

0.817
  comM Glaesserella parasuis strain SC1401

65.02

99.803

0.649
  comM Haemophilus influenzae Rd KW20

64.51

100

0.649
  comM Legionella pneumophila str. Paris

48.992

97.83

0.479
  comM Legionella pneumophila strain ERS1305867

48.992

97.83

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.504

100

0.436

Multiple sequence alignment