Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R1Y14_RS04170 Genome accession   NZ_CP136899
Coordinates   800840..801571 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ST62     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 795840..806571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y14_RS04140 (R1Y14_04140) dnaK 795980..797803 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  R1Y14_RS04145 (R1Y14_04145) - 797814..798218 (+) 405 WP_000343113.1 hypothetical protein -
  R1Y14_RS04150 (R1Y14_04150) dnaJ 798562..799698 (+) 1137 WP_001066301.1 molecular chaperone DnaJ -
  R1Y14_RS04155 (R1Y14_04155) - 799727..799903 (-) 177 WP_001810526.1 hypothetical protein -
  R1Y14_RS04160 (R1Y14_04160) - 800065..800352 (-) 288 WP_000777760.1 hypothetical protein -
  R1Y14_RS04165 (R1Y14_04165) - 800362..800772 (-) 411 WP_001278301.1 HIT family protein -
  R1Y14_RS04170 (R1Y14_04170) pptA 800840..801571 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  R1Y14_RS04175 (R1Y14_04175) - 801568..802617 (+) 1050 WP_000653768.1 ABC transporter permease -
  R1Y14_RS04180 (R1Y14_04180) - 802785..803114 (-) 330 WP_000132583.1 hypothetical protein -
  R1Y14_RS04185 (R1Y14_04185) - 803391..803729 (+) 339 WP_000682136.1 LytTR family DNA-binding domain-containing protein -
  R1Y14_RS04190 (R1Y14_04190) comE/blpR 803734..804471 (+) 738 WP_001219137.1 LytTR family DNA-binding domain-containing protein Regulator
  R1Y14_RS04195 (R1Y14_04195) - 804485..805825 (+) 1341 WP_001099894.1 sensor histidine kinase -
  R1Y14_RS04200 (R1Y14_04200) blpC 805869..806024 (-) 156 WP_000358812.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=893239 R1Y14_RS04170 WP_000889923.1 800840..801571(+) (pptA) [Streptococcus pneumoniae strain ST62]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=893239 R1Y14_RS04170 WP_000889923.1 800840..801571(+) (pptA) [Streptococcus pneumoniae strain ST62]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708