Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCV37_RS13415 Genome accession   NZ_AP024903
Coordinates   3072641..3073165 (+) Length   174 a.a.
NCBI ID   WP_038185809.1    Uniprot ID   -
Organism   Vibrio rhizosphaerae strain LMG 23790     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3067641..3078165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV37_RS13400 uvrA 3067739..3070561 (-) 2823 WP_038185804.1 excinuclease ABC subunit UvrA -
  OCV37_RS13405 galU 3070716..3071603 (-) 888 WP_038185806.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV37_RS13410 qstR 3071721..3072368 (-) 648 WP_038185867.1 response regulator transcription factor Regulator
  OCV37_RS13415 ssb 3072641..3073165 (+) 525 WP_038185809.1 single-stranded DNA-binding protein Machinery gene
  OCV37_RS13420 - 3073311..3074318 (-) 1008 WP_038185812.1 C-terminal binding protein -
  OCV37_RS13425 - 3074586..3075746 (+) 1161 WP_038185814.1 Glu/Leu/Phe/Val dehydrogenase -
  OCV37_RS13430 - 3075812..3077062 (+) 1251 WP_084717547.1 nitrate/nitrite transporter -
  OCV37_RS13435 - 3077113..3077730 (-) 618 WP_051680889.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19243.18 Da        Isoelectric Point: 5.2252

>NTDB_id=89321 OCV37_RS13415 WP_038185809.1 3072641..3073165(+) (ssb) [Vibrio rhizosphaerae strain LMG 23790]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSETWRDKTTGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQERYTTEVVVQGFNGVMQMLGGRQGSGGQAQSGMQSQQQNSGWGQPQQPQSQAAHQPQQQSSPQPQ
YNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=89321 OCV37_RS13415 WP_038185809.1 3072641..3073165(+) (ssb) [Vibrio rhizosphaerae strain LMG 23790]
ATGGCAAGCCGTGGAGTAAACAAAGTTATATTAGTTGGGAACCTTGGAAGTGATCCTGAAGTTCGTTATATGCCAAGTGG
CGGTGCAGTTGCGAACATCACTATTGCGACGTCGGAAACATGGCGCGATAAGACAACAGGTGAACAAAGAGAAAAAACCG
AGTGGCATCGTGTTGCCCTGTTCGGAAAATTGGCAGAAGTTGCAGGAGAATACCTACGCAAAGGTTCTCAGGTATACATT
GAAGGGCAGCTACAAACGCGCAAATGGCAAGATCAAAGTGGTCAGGAGCGTTATACAACCGAAGTCGTCGTTCAAGGGTT
TAACGGTGTAATGCAAATGCTGGGTGGTCGTCAAGGCTCTGGTGGTCAGGCTCAGTCCGGAATGCAGTCTCAACAACAAA
ATAGTGGTTGGGGACAACCGCAACAGCCTCAGTCCCAAGCAGCTCATCAGCCTCAGCAACAATCGTCACCACAGCCACAG
TACAATGAGCCACCTATGGATTTCGATGATGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.564

100

0.839
  ssb Glaesserella parasuis strain SC1401

54.645

100

0.575
  ssb Neisseria meningitidis MC58

46.703

100

0.489
  ssb Neisseria gonorrhoeae MS11

46.111

100

0.477

Multiple sequence alignment