Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCV37_RS13410 Genome accession   NZ_AP024903
Coordinates   3071721..3072368 (-) Length   215 a.a.
NCBI ID   WP_038185867.1    Uniprot ID   -
Organism   Vibrio rhizosphaerae strain LMG 23790     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3066721..3077368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV37_RS13400 uvrA 3067739..3070561 (-) 2823 WP_038185804.1 excinuclease ABC subunit UvrA -
  OCV37_RS13405 galU 3070716..3071603 (-) 888 WP_038185806.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV37_RS13410 qstR 3071721..3072368 (-) 648 WP_038185867.1 response regulator transcription factor Regulator
  OCV37_RS13415 ssb 3072641..3073165 (+) 525 WP_038185809.1 single-stranded DNA-binding protein Machinery gene
  OCV37_RS13420 - 3073311..3074318 (-) 1008 WP_038185812.1 C-terminal binding protein -
  OCV37_RS13425 - 3074586..3075746 (+) 1161 WP_038185814.1 Glu/Leu/Phe/Val dehydrogenase -
  OCV37_RS13430 - 3075812..3077062 (+) 1251 WP_084717547.1 nitrate/nitrite transporter -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25301.37 Da        Isoelectric Point: 9.2277

>NTDB_id=89320 OCV37_RS13410 WP_038185867.1 3071721..3072368(-) (qstR) [Vibrio rhizosphaerae strain LMG 23790]
MKRPNYSRMLYILYPDDQEPATFYDEIEIALGQILPKIQPRQFMLSHQADRHKILLFDYQQKEVLLSRLNMHNELDLCLE
TVVINVEKRPRTEELLQLGNLKGLFYRSDPIELIIAALREIREGQIYLPRHICGQLLHYYRHLFNNKNISAAISLTSREL
EILRCLKTGATNTQIADNLFISEFTVKSHLYQIFKKISVKNRTQATTWARQNLVS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=89320 OCV37_RS13410 WP_038185867.1 3071721..3072368(-) (qstR) [Vibrio rhizosphaerae strain LMG 23790]
ATGAAAAGACCAAATTACAGCCGAATGCTTTATATCCTTTATCCGGATGATCAGGAACCTGCAACGTTCTACGATGAAAT
CGAAATTGCACTAGGACAGATACTGCCGAAAATTCAACCCCGGCAATTTATGCTGTCTCATCAGGCTGATCGGCACAAAA
TACTCTTGTTTGATTATCAACAAAAAGAAGTCTTGCTATCTCGTTTGAATATGCACAATGAACTGGATTTATGCCTCGAA
ACCGTTGTGATCAATGTTGAGAAACGCCCGAGAACAGAAGAACTGCTCCAGTTAGGTAATCTGAAGGGACTCTTTTATCG
TAGTGATCCGATTGAACTGATCATTGCTGCGCTGCGTGAGATCCGAGAAGGACAAATCTATTTACCGCGACATATTTGTG
GTCAGCTTCTTCATTACTACCGACATCTTTTTAACAATAAGAATATTAGTGCTGCGATATCTCTGACCTCCAGAGAGTTG
GAGATCCTACGCTGTCTTAAAACAGGTGCCACGAATACACAAATCGCAGATAACCTGTTTATTAGTGAGTTCACAGTCAA
GTCACATCTGTATCAGATTTTTAAGAAAATTTCAGTGAAAAATCGAACTCAAGCCACAACATGGGCAAGACAAAATCTAG
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

48.848

100

0.493
  qstR Vibrio campbellii strain DS40M4

46.154

100

0.474
  qstR Vibrio parahaemolyticus RIMD 2210633

45.116

100

0.451

Multiple sequence alignment