Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R0137_RS04605 Genome accession   NZ_CP136865
Coordinates   1043810..1045300 (-) Length   496 a.a.
NCBI ID   WP_407328915.1    Uniprot ID   -
Organism   Congregibacter brevis strain IMCC45268     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1038810..1050300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0137_RS04580 (R0137_04555) - 1039059..1039964 (+) 906 WP_407328910.1 phytanoyl-CoA dioxygenase family protein -
  R0137_RS04585 (R0137_04560) - 1039966..1041273 (-) 1308 WP_407328911.1 DUF3422 family protein -
  R0137_RS04590 (R0137_04565) - 1041327..1042352 (-) 1026 WP_407328912.1 DUF3080 family protein -
  R0137_RS04595 (R0137_04570) - 1042397..1043017 (-) 621 WP_407328913.1 glutathione S-transferase family protein -
  R0137_RS04600 (R0137_04575) - 1043170..1043613 (+) 444 WP_407328914.1 c-type cytochrome -
  R0137_RS04605 (R0137_04580) comM 1043810..1045300 (-) 1491 WP_407328915.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R0137_RS04610 (R0137_04585) - 1045474..1045740 (-) 267 WP_407328916.1 accessory factor UbiK family protein -
  R0137_RS04615 (R0137_04590) glnK 1046053..1046391 (+) 339 WP_040809830.1 P-II family nitrogen regulator -
  R0137_RS04620 (R0137_04595) - 1046449..1047690 (+) 1242 WP_407328918.1 ammonium transporter -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53364.37 Da        Isoelectric Point: 9.0696

>NTDB_id=893177 R0137_RS04605 WP_407328915.1 1043810..1045300(-) (comM) [Congregibacter brevis strain IMCC45268]
MSYAVVLSRANQGLDAPLVRVEVHLSNGLPAFTVVGMPETAVRESKDRVRSALLNSHFEFPDRRITVNLAPADLPKGGGR
FDLPIALGILCASGQLPQGTLLDSECVGELALDGTLRSVRGTVTAAMAASQNKRRIVLSLESASLCKAVPHSRLVYAADL
LSLCAILRGRAPLPDAQTTSQTVETVGADMAEVNGQLVPKRALEIAASGGHNLLLSGPPGTGKSLLANCLPGILPPPDDS
EWLTVCALYDIQGKTHRKRQRAFRAPHHSASAAALVGGGSIPAPGEISLAHGGVLFLDELPEFSRHTLDMLREPLETGEI
RLARATCSIRYPARFQLIAAMNPCPCGYAGDGQKPCKCGAAQRLSYGARVSGPLLDRMDLQVRVNRENAEDLFAPHRNES
SATVQKRVVQSRKRQYLRQGKCNAMLKGSELLEKCACGPQERQLIQRSAKQLDLSARAIHRLLRVARSVADLRKEESVTT
AAVKEALAYRDTVNQE

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=893177 R0137_RS04605 WP_407328915.1 1043810..1045300(-) (comM) [Congregibacter brevis strain IMCC45268]
ATGAGCTATGCCGTAGTGCTCTCCCGAGCCAATCAGGGACTGGATGCTCCGCTGGTTCGTGTGGAGGTTCACCTCTCAAA
CGGGCTTCCCGCCTTTACCGTTGTAGGAATGCCCGAAACGGCGGTCCGTGAAAGCAAAGACCGGGTTCGCAGTGCCCTTC
TAAACTCCCACTTCGAATTCCCGGATCGACGAATCACCGTCAACCTGGCTCCTGCCGATCTACCAAAAGGTGGAGGACGG
TTTGATCTACCCATCGCCTTGGGAATTCTGTGCGCCTCCGGGCAACTACCCCAAGGTACCTTGCTGGATAGTGAGTGTGT
CGGAGAGCTCGCACTTGACGGCACACTCAGAAGCGTTCGTGGCACAGTCACCGCGGCGATGGCCGCGAGCCAAAACAAGC
GTCGTATTGTTCTGTCACTGGAGTCCGCATCTCTGTGCAAAGCCGTGCCGCATTCACGACTTGTTTACGCAGCAGACTTA
CTATCACTTTGCGCAATCTTGCGTGGTCGAGCGCCTTTACCAGACGCACAGACAACCAGCCAGACAGTAGAAACAGTGGG
TGCAGACATGGCGGAGGTCAACGGCCAGCTCGTCCCCAAACGCGCGCTGGAGATTGCCGCCAGCGGCGGCCACAACCTTC
TGTTATCAGGCCCTCCCGGTACCGGCAAAAGCCTTCTCGCGAATTGTTTGCCGGGTATTTTGCCGCCCCCCGACGATAGC
GAGTGGCTGACGGTTTGCGCACTCTATGACATCCAAGGCAAAACTCACAGAAAACGGCAGCGAGCCTTTCGTGCTCCGCA
TCACAGTGCTAGTGCCGCAGCACTGGTCGGCGGGGGCTCAATTCCTGCGCCCGGGGAGATTTCTCTGGCACATGGCGGCG
TGTTGTTTCTCGATGAGTTACCAGAGTTCTCGCGCCACACCTTAGATATGCTTCGAGAACCTCTGGAAACCGGCGAGATC
CGGCTCGCTCGAGCGACGTGCAGTATCCGCTATCCGGCACGCTTTCAGTTGATTGCCGCAATGAACCCTTGCCCCTGCGG
ATATGCCGGAGACGGCCAGAAGCCCTGCAAATGCGGCGCGGCCCAGCGTTTGAGCTACGGCGCGCGAGTGTCCGGCCCCC
TTCTGGATCGCATGGATTTGCAGGTGCGTGTTAATCGAGAGAACGCCGAGGATCTGTTCGCTCCCCACCGAAATGAGAGC
TCCGCCACAGTGCAGAAACGCGTGGTCCAATCTAGAAAGAGACAGTATCTGCGTCAGGGCAAGTGCAACGCCATGCTCAA
GGGATCCGAGCTACTGGAAAAATGCGCCTGTGGCCCACAGGAACGGCAACTCATTCAAAGAAGCGCGAAGCAGCTAGACT
TGTCTGCCAGGGCAATACACAGGCTCCTGCGCGTTGCACGAAGTGTTGCTGATTTGAGAAAAGAAGAATCCGTAACTACC
GCAGCGGTAAAAGAAGCGCTGGCATATAGAGATACGGTTAATCAGGAATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-490)

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.515

100

0.494
  comM Haemophilus influenzae Rd KW20

48.228

100

0.494
  comM Vibrio campbellii strain DS40M4

48.485

99.798

0.484
  comM Glaesserella parasuis strain SC1401

47.619

100

0.484
  comM Legionella pneumophila str. Paris

44.752

100

0.456
  comM Legionella pneumophila strain ERS1305867

44.752

100

0.456
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

37.6

100

0.379