Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R0135_RS15945 Genome accession   NZ_CP136864
Coordinates   3559286..3559804 (+) Length   172 a.a.
NCBI ID   WP_407347891.1    Uniprot ID   -
Organism   Congregibacter variabilis strain IMCC43200     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3554286..3564804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0135_RS15935 (R0135_15870) uvrA 3554993..3557845 (-) 2853 WP_407347889.1 excinuclease ABC subunit UvrA -
  R0135_RS15940 (R0135_15875) - 3558004..3559209 (+) 1206 WP_407347890.1 MFS transporter -
  R0135_RS15945 (R0135_15880) ssb 3559286..3559804 (+) 519 WP_407347891.1 single-stranded DNA-binding protein Machinery gene
  R0135_RS15950 (R0135_15885) - 3559846..3560727 (+) 882 WP_407347892.1 sugar nucleotide-binding protein -
  R0135_RS15955 (R0135_15890) moaB 3560730..3561248 (+) 519 WP_407347893.1 molybdenum cofactor biosynthesis protein B -
  R0135_RS15960 (R0135_15895) glp 3561251..3562462 (+) 1212 WP_407347894.1 gephyrin-like molybdotransferase Glp -
  R0135_RS15965 (R0135_15900) fabB 3562505..3563731 (-) 1227 WP_407347895.1 beta-ketoacyl-ACP synthase I -
  R0135_RS15970 (R0135_15905) fabA 3563735..3564250 (-) 516 WP_407347896.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18111.77 Da        Isoelectric Point: 4.9795

>NTDB_id=893168 R0135_RS15945 WP_407347891.1 3559286..3559804(+) (ssb) [Congregibacter variabilis strain IMCC43200]
MASRGVNKVILVGNLGAEPETRFMPSGGSVTNVRLATSETWKDKQTGQPQERTEWHRVVFFNRLAEIAAEYLHKGSKLYV
EGAIRTRKWQDQSGQDRYTTEIVGSEMQMLDSRGGSGTGGAGGSGDSGYDQSYPEAGGGPSGGSSHSSAPQGGSAPSSPP
AAMGDIDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=893168 R0135_RS15945 WP_407347891.1 3559286..3559804(+) (ssb) [Congregibacter variabilis strain IMCC43200]
ATGGCTTCGCGCGGCGTCAATAAAGTGATTCTTGTGGGCAATTTGGGCGCTGAGCCAGAAACCCGCTTTATGCCTTCGGG
TGGTTCTGTGACCAATGTACGTCTGGCCACATCCGAAACCTGGAAAGACAAGCAAACCGGGCAGCCGCAAGAGCGCACAG
AATGGCACAGAGTGGTCTTTTTCAACCGTTTAGCTGAGATCGCGGCTGAGTATCTGCACAAGGGTTCCAAGCTTTACGTA
GAGGGCGCGATCCGCACCCGCAAGTGGCAGGATCAATCAGGCCAGGATCGCTACACCACCGAGATCGTCGGCAGTGAAAT
GCAAATGCTGGACAGCCGCGGCGGCAGCGGAACCGGCGGTGCAGGCGGCAGCGGTGACAGCGGTTATGACCAGAGCTACC
CCGAAGCGGGTGGCGGACCATCGGGCGGTTCAAGCCATAGCTCGGCACCTCAGGGTGGCTCAGCTCCTTCCTCTCCACCT
GCTGCGATGGGGGATATCGACGACGATATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.005

100

0.564
  ssb Glaesserella parasuis strain SC1401

53.333

100

0.558
  ssb Neisseria gonorrhoeae MS11

46.067

100

0.477
  ssb Neisseria meningitidis MC58

43.258

100

0.448
  ssbA Bacillus subtilis subsp. subtilis str. 168

36

100

0.366