Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R0135_RS09815 Genome accession   NZ_CP136864
Coordinates   2229395..2230885 (+) Length   496 a.a.
NCBI ID   WP_407346648.1    Uniprot ID   -
Organism   Congregibacter variabilis strain IMCC43200     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2224395..2235885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0135_RS09785 (R0135_09745) - 2224435..2224968 (-) 534 WP_407346643.1 hypothetical protein -
  R0135_RS09790 (R0135_09750) - 2225235..2225783 (-) 549 WP_407346644.1 PEP-CTERM sorting domain-containing protein -
  R0135_RS09795 (R0135_09755) - 2226208..2226717 (+) 510 WP_407346645.1 hypothetical protein -
  R0135_RS09800 (R0135_09760) - 2227058..2228299 (-) 1242 WP_407346646.1 ammonium transporter -
  R0135_RS09805 (R0135_09765) glnK 2228355..2228693 (-) 339 WP_040809830.1 P-II family nitrogen regulator -
  R0135_RS09810 (R0135_09770) - 2229007..2229273 (+) 267 WP_407346647.1 accessory factor UbiK family protein -
  R0135_RS09815 (R0135_09775) comM 2229395..2230885 (+) 1491 WP_407346648.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R0135_RS09820 (R0135_09780) - 2231001..2231435 (-) 435 WP_407346649.1 c-type cytochrome -
  R0135_RS09825 (R0135_09785) - 2231589..2232209 (+) 621 WP_407346651.1 glutathione S-transferase family protein -
  R0135_RS09830 (R0135_09790) - 2232176..2233300 (+) 1125 WP_407346652.1 DUF3080 family protein -
  R0135_RS09835 (R0135_09795) - 2233344..2234651 (+) 1308 WP_407346653.1 DUF3422 family protein -
  R0135_RS09840 (R0135_09800) - 2234653..2235558 (-) 906 WP_407346654.1 phytanoyl-CoA dioxygenase family protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53025.63 Da        Isoelectric Point: 8.0104

>NTDB_id=893158 R0135_RS09815 WP_407346648.1 2229395..2230885(+) (comM) [Congregibacter variabilis strain IMCC43200]
MNYAVVLSRANQGLNAPLVRVEVHLSNGLPAFTVVGMPETAVRESKDRVRSALINSHFEFPDRRITVNLAPADLPKGGGR
FDLPIALGILCASGQLPQDALLGSECIGELALDGTLRPVRGTVAAAMAAGQSKRRILLPTDSVQSCRAIPDSTLVHSSDL
LSLCAVLRGRAQPPETSTAPLESMQAGPDLCEVSGQLVPRRALEIAAAGGHNLLLTGPPGTGKTLLANCLPGILPPPDHR
EWLTVCALHDLQGETLRGQQRAFRAPHHSASAAALVGGGSIPRPGEISMAHGGVLFLDELPEFSRHTLDMLREPLETGEI
CLARASCSIRYPARFQLIAAMNPCPCGFSGDPHKPCKCSTAQRLSYSARVSGPLLDRLDLHVRVEREDAGDLFSCGQGEN
SATVRSRVIRSKTQQHRRQGQSNSRLTGSTLIDSCKLGTEEKALVERSAAGLKLSARAVHRMLRVARSIADLAEEDSVSA
PHLQEALAYRDTVQQH

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=893158 R0135_RS09815 WP_407346648.1 2229395..2230885(+) (comM) [Congregibacter variabilis strain IMCC43200]
ATGAACTACGCCGTGGTTCTATCTCGGGCCAATCAAGGCCTGAACGCGCCATTGGTGCGTGTTGAAGTACACCTCTCTAA
CGGACTGCCGGCTTTTACGGTCGTGGGGATGCCAGAGACTGCCGTGCGGGAGAGCAAAGATCGCGTGCGCAGCGCGCTGA
TCAACTCCCACTTCGAGTTTCCTGACCGGCGTATTACGGTGAACCTCGCACCTGCGGACCTTCCAAAGGGGGGAGGTCGC
TTCGATCTTCCCATCGCGCTGGGCATCCTCTGTGCGTCGGGGCAGCTACCGCAAGACGCACTGCTGGGAAGCGAGTGCAT
CGGGGAGCTGGCTCTGGATGGGACTTTACGGCCGGTGCGCGGCACTGTCGCCGCGGCAATGGCTGCCGGCCAGAGTAAAC
GCCGAATACTGCTTCCCACTGACTCCGTGCAGTCCTGTCGGGCCATACCCGACAGCACACTCGTCCATTCCTCAGACCTG
CTGTCGCTCTGTGCGGTGCTGCGCGGACGAGCACAGCCGCCCGAAACGAGTACAGCTCCACTGGAGTCCATGCAAGCTGG
GCCTGATCTTTGCGAAGTATCGGGTCAACTCGTACCGCGCCGTGCGTTGGAGATTGCCGCCGCCGGCGGACACAACCTCT
TGCTGACAGGCCCCCCAGGCACGGGTAAAACCCTTCTTGCCAATTGCTTACCGGGCATCCTGCCACCGCCCGATCACCGT
GAGTGGCTTACAGTATGCGCGCTGCATGACCTGCAAGGAGAAACGCTTCGGGGACAGCAACGCGCCTTTAGAGCACCGCA
TCACAGTGCCAGCGCTGCAGCCCTGGTCGGGGGTGGCTCCATCCCCAGGCCAGGAGAGATCTCGATGGCACACGGGGGCG
TCCTGTTTCTCGACGAACTCCCAGAGTTCTCCCGGCACACACTGGATATGCTCAGAGAGCCACTGGAGACCGGCGAGATC
TGCTTGGCCCGTGCAAGTTGCAGTATTCGCTACCCCGCCCGCTTTCAGTTGATTGCGGCGATGAACCCCTGCCCCTGCGG
ATTTTCCGGGGACCCTCACAAGCCCTGTAAATGCAGTACTGCACAACGCCTGAGCTACAGCGCGCGGGTGTCCGGCCCGT
TACTGGACCGACTAGACCTACATGTTCGCGTCGAGCGGGAAGATGCAGGCGACTTGTTTTCCTGTGGCCAGGGCGAAAAC
TCAGCGACTGTGCGCAGCCGCGTAATACGCTCAAAGACACAGCAGCATCGGCGGCAAGGCCAAAGCAACTCTCGGCTCAC
CGGTTCAACGCTTATAGACAGTTGCAAGCTTGGCACTGAAGAAAAAGCACTTGTTGAACGCAGTGCGGCAGGATTGAAAC
TGTCTGCCAGAGCAGTGCACAGGATGCTGCGCGTAGCACGCAGCATTGCCGATCTGGCAGAAGAAGATTCCGTGAGCGCC
CCCCACTTACAGGAAGCCTTAGCTTATCGCGACACGGTGCAACAACATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(398-490)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

48.509

100

0.492
  comM Vibrio cholerae strain A1552

48.283

99.798

0.482
  comM Glaesserella parasuis strain SC1401

47.695

100

0.48
  comM Vibrio campbellii strain DS40M4

47.879

99.798

0.478
  comM Legionella pneumophila str. Paris

43.898

100

0.45
  comM Legionella pneumophila strain ERS1305867

43.898

100

0.45
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

39.2

100

0.395