Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R1221_RS20805 Genome accession   NZ_CP136824
Coordinates   4379696..4380232 (-) Length   178 a.a.
NCBI ID   WP_047459655.1    Uniprot ID   A0AAW7F306
Organism   Citrobacter koseri strain K1818     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4374696..4385232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1221_RS20790 (R1221_20790) - 4375425..4378142 (+) 2718 WP_394805300.1 cation-transporting P-type ATPase -
  R1221_RS20795 (R1221_20795) - 4378422..4378961 (+) 540 WP_317391304.1 hypothetical protein -
  R1221_RS20800 (R1221_20800) - 4379004..4379435 (-) 432 WP_012134612.1 universal stress protein -
  R1221_RS20805 (R1221_20805) ssb 4379696..4380232 (-) 537 WP_047459655.1 single-stranded DNA-binding protein SSB1 Machinery gene
  R1221_RS20810 (R1221_20810) uvrA 4380482..4383304 (+) 2823 WP_012134614.1 excinuclease ABC subunit UvrA -
  R1221_RS20815 (R1221_20815) - 4383400..4383756 (-) 357 WP_012134615.1 MmcQ/YjbR family DNA-binding protein -
  R1221_RS20820 (R1221_20820) aphA 4383959..4384672 (-) 714 WP_012134616.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19110.13 Da        Isoelectric Point: 5.2358

>NTDB_id=893030 R1221_RS20805 WP_047459655.1 4379696..4380232(-) (ssb) [Citrobacter koseri strain K1818]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQS
APAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=893030 R1221_RS20805 WP_047459655.1 4379696..4380232(-) (ssb) [Citrobacter koseri strain K1818]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAGCAGACCGGTGAGATGAAAGAGCAGACGG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTACATT
GAAGGTCAGTTGCGTACCCGTAAATGGACCGATCAGTCCGGTCAGGACAAATACACCACTGAAGTGGTGGTCAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCTCCGGCTGGCGGCAATATGGGCGGCGGTCAGCAGCAGG
GCGGTTGGGGTCAGCCTCAGCAACCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAACAATCC
GCTCCGGCACCGTCTAACGAACCGCCAATGGATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.764
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

46.111

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.111

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.371