Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCV37_RS00155 Genome accession   NZ_AP024903
Coordinates   36200..37723 (+) Length   507 a.a.
NCBI ID   WP_038180394.1    Uniprot ID   -
Organism   Vibrio rhizosphaerae strain LMG 23790     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 31200..42723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV37_RS00140 - 32822..33763 (-) 942 WP_038180401.1 branched-chain amino acid transaminase -
  OCV37_RS00145 ilvM 33774..34058 (-) 285 WP_038180398.1 acetolactate synthase 2 small subunit -
  OCV37_RS00150 ilvG 34071..35717 (-) 1647 WP_038180395.1 acetolactate synthase 2 catalytic subunit -
  OCV37_RS00155 comM 36200..37723 (+) 1524 WP_038180394.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCV37_RS00160 - 37917..38795 (+) 879 WP_038180391.1 acyltransferase -
  OCV37_RS00165 - 38921..39520 (-) 600 WP_038180389.1 thiol:disulfide interchange protein DsbA/DsbL -
  OCV37_RS00170 - 39671..40657 (-) 987 WP_038180387.1 serine/threonine protein kinase -
  OCV37_RS00175 - 40817..42706 (-) 1890 WP_038180384.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55164.34 Da        Isoelectric Point: 7.1017

>NTDB_id=89299 OCV37_RS00155 WP_038180394.1 36200..37723(+) (comM) [Vibrio rhizosphaerae strain LMG 23790]
MGLAVIHSRASVGVEAPLVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIIHSRFEFPPKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIISDHLADYEFLGELALSGQLRTVKGVLPAALAAGLANRALVVPHENGDQAALVGQGQHLSAGSL
QEVCQALCGDVSLGLYQSQPDMSQPASTRDLQDIIGQQQGKRALEIAAAGHHNLLFLGPPGTGKTMLASRLCDLLPEMSN
EEAMETAAVASLTQQDIHQYNWKQRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERRVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGQESRINPQHILRYLSRLSGPLLDRFDLSIEIPALPKGMLAEGGGR
GETTQIVRERVLRARALMLRLRGKANSLLTSREIETFCPLAKPDADFLENALHRLGLSIRAYHRIIKVARTIADLAEEEH
IQRAHLAEALGYRAMDRLLKQLTMQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=89299 OCV37_RS00155 WP_038180394.1 36200..37723(+) (comM) [Vibrio rhizosphaerae strain LMG 23790]
ATGGGGTTAGCAGTCATTCATAGCCGGGCGAGTGTCGGTGTGGAAGCACCACTCGTGACGGTTGAAGTGCATATTAGTAA
TGGCATGCCGGGATTTACTTTGGTCGGGCTGCCGGAGACGACCGTGAAAGAGTCCCGGGATCGGGTTCGCAGTGCGATTA
TCCACTCCCGGTTTGAATTTCCGCCCAAACGTATCACGGTTAATCTGGCACCGGCCGATTTACCGAAAGAGGGCGGACGA
TTTGATCTGCCGATCGCTTTGGGCATTCTGGCCGCTTCTGATCAAATCATATCGGACCATCTGGCCGACTATGAGTTTTT
AGGGGAGTTGGCTTTATCCGGTCAGTTACGGACAGTCAAAGGGGTATTGCCTGCTGCGCTGGCGGCCGGGCTGGCAAACC
GTGCGCTGGTGGTGCCGCATGAAAATGGCGATCAGGCGGCTTTGGTCGGGCAAGGGCAGCATCTCTCAGCCGGTAGTTTG
CAGGAAGTCTGTCAGGCGTTGTGTGGTGATGTTTCATTGGGGTTATATCAATCTCAGCCGGATATGAGTCAACCCGCGTC
CACACGAGATTTACAGGATATTATTGGTCAGCAACAGGGCAAGCGGGCTTTAGAAATTGCAGCCGCCGGTCATCATAATT
TGTTGTTTCTCGGCCCGCCGGGGACGGGTAAAACGATGCTAGCCTCGCGGTTATGTGACTTATTGCCGGAGATGAGTAAC
GAAGAAGCGATGGAAACTGCAGCCGTTGCATCCCTGACGCAGCAGGATATTCATCAGTACAACTGGAAACAGCGGCCATT
TCGTGCTCCGCATCATTCCAGTTCGATGGCTGCATTGGTTGGCGGTGGTTCGATACCTCGCCCCGGGGAAATTTCGCTTG
CTCATAATGGGTTGCTCTTTCTTGATGAAATGCCGGAATTTGAACGTCGGGTACTGGATTCATTGCGTGAACCGTTGGAA
TCAGGAGAAATTATCATTTCCCGGGCGCAGGGGAAGACACGTTTCCCGGCCCGTTTTCAGTTAGTCGGTGCATTAAATCC
AAGTCCGACCGGCTATTATGAAGGTCAGGAAAGTCGGATTAATCCCCAACATATTCTCCGTTATCTGAGTCGATTATCGG
GCCCGTTATTGGATCGGTTTGACTTGTCGATCGAGATTCCCGCTTTACCCAAAGGTATGCTTGCCGAAGGAGGTGGACGG
GGAGAGACAACACAGATCGTTCGTGAGCGAGTGCTTCGGGCGCGTGCGTTAATGCTTCGTTTACGGGGGAAAGCGAATTC
TCTGCTGACCAGTCGGGAAATCGAGACGTTTTGTCCATTGGCAAAGCCGGATGCTGACTTTCTGGAAAATGCATTGCACC
GTCTCGGGCTTTCTATTCGCGCGTATCACCGTATTATCAAAGTTGCCCGGACCATTGCTGATTTAGCGGAAGAAGAGCAC
ATCCAGCGGGCACATCTGGCCGAAGCGTTGGGCTATCGTGCGATGGATCGATTATTGAAACAATTGACGATGCAAGCGGT
TTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

82.051

100

0.821
  comM Vibrio campbellii strain DS40M4

81.46

100

0.815
  comM Haemophilus influenzae Rd KW20

64.567

100

0.647
  comM Glaesserella parasuis strain SC1401

64.625

99.803

0.645
  comM Legionella pneumophila str. Paris

48.79

97.83

0.477
  comM Legionella pneumophila strain ERS1305867

48.79

97.83

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment