Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R1158_RS22220 Genome accession   NZ_CP136810
Coordinates   4688793..4690313 (+) Length   506 a.a.
NCBI ID   WP_047460055.1    Uniprot ID   -
Organism   Citrobacter koseri strain K1721     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4683793..4695313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1158_RS22200 (R1158_22200) ilvE 4685350..4686279 (-) 930 WP_012131120.1 branched-chain-amino-acid transaminase -
  R1158_RS22205 (R1158_22205) ilvM 4686297..4686560 (-) 264 WP_012131119.1 acetolactate synthase 2 small subunit -
  R1158_RS22210 (R1158_22210) ilvG 4686557..4688203 (-) 1647 WP_115626141.1 acetolactate synthase 2 catalytic subunit -
  R1158_RS23120 ilvX 4688206..4688256 (-) 51 WP_202401504.1 peptide IlvX -
  R1158_RS22215 (R1158_22215) ilvL 4688343..4688441 (-) 99 WP_001311244.1 ilv operon leader peptide -
  R1158_RS22220 (R1158_22220) comM 4688793..4690313 (+) 1521 WP_047460055.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R1158_RS22225 (R1158_22225) maoP 4690340..4690678 (-) 339 WP_012131115.1 macrodomain Ori organization protein MaoP -
  R1158_RS22230 (R1158_22230) hdfR 4690785..4691630 (+) 846 WP_012131114.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55000.06 Da        Isoelectric Point: 7.6395

>NTDB_id=892917 R1158_RS22220 WP_047460055.1 4688793..4690313(+) (comM) [Citrobacter koseri strain K1721]
MSLSIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTTNKLNEYELVGELALTGALRGVPGAISSATEAIRAGRHIIVAKENATEVGLISGEGCLIADHL
QTVCAFLEGKRDLEKPVSTDSDACLLHDDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPSLSDK
EALESAAILSLVNADTVQRQWKRRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCSPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQAAVKG
EDSATVKVRVISARKRQYERQGKLNAHLDSQGIRKYCSLHSDDAHWLEETLIHLGLSIRAWQRLLKVARTIADLEQTENI
TRLHLQEAVGYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=892917 R1158_RS22220 WP_047460055.1 4688793..4690313(+) (comM) [Citrobacter koseri strain K1721]
ATGTCACTGTCGATTGTTCACACACGCGCCGCACTTGGCGTTAATGCGCCGCCAATAACCATCGAGGTGCATATCAGTAA
TGGCCTGCCGGGTTTAACAATGGTTGGGCTACCTGAAACGACGGTAAAGGAGGCCCGGGATCGGGTTCGCAGCGCAATCA
TCAATAGCGGGTATGAATTTCCGGCGAAGAAAATCACCATTAATCTGGCCCCGGCAGATTTACCCAAAGAGGGCGGAAGA
TATGATTTACCTATCGCAATTGCGCTTCTGGCGGCGTCAGAGCAACTTACAACAAATAAGCTTAATGAATATGAACTGGT
GGGCGAACTGGCCCTTACAGGTGCGTTACGTGGCGTTCCAGGCGCGATATCCAGTGCAACCGAGGCGATTCGGGCAGGCA
GACATATCATTGTTGCAAAAGAGAATGCAACAGAAGTTGGGCTAATCAGCGGAGAGGGATGCCTGATTGCAGATCATCTG
CAAACGGTATGCGCATTTCTGGAAGGGAAACGGGATCTTGAGAAACCAGTGTCTACCGATTCTGACGCCTGTTTACTGCA
TGACGATCTCAGTGATGTTATCGGTCAGGAACAGGGGAAACGAGGCCTGGAAATCACGGCCGCAGGAGGGCACAACCTGC
TGCTGATAGGCCCGCCAGGTACGGGAAAAACCATGCTGGCCAGCCGCATTAATGGGCTACTGCCATCATTAAGCGACAAA
GAAGCGCTGGAAAGTGCGGCGATTCTCAGCCTGGTGAACGCCGATACGGTACAAAGGCAGTGGAAACGGCGTCCTTTCCG
CTCACCTCATCACAGCGCATCATTAACGGCAATGGTGGGGGGGGGTTCAATACCCGCGCCAGGAGAAATATCGCTGGCGC
ACAACGGTATTTTGTTTCTGGATGAACTGCCTGAGTTTGAGCGACGCACGCTGGATGCGCTGCGTGAACCTATTGAGTCT
GGTCAGATACACCTTTCGCGCACCCGGGCAAAGATCACCTATCCTGCGCGCTTCCAACTGGTTGCAGCGATGAATCCCAG
CCCGACCGGTCACTATCAGGGGAACCATAATCGCTGTAGCCCGGAACAGACGTTGCGCTACCTCAGCCGTCTATCCGGCC
CCTTTCTCGATCGATTCGATCTCTCGCTCGAAATTCCCCTGCCACCGCCCGGTATACTCAGTCAGGCAGCGGTTAAAGGC
GAGGACAGCGCTACAGTGAAAGTACGGGTGATATCCGCACGGAAACGCCAGTACGAACGACAGGGGAAGCTAAACGCCCA
TCTGGACAGCCAGGGTATACGAAAGTACTGCTCTCTACACAGTGATGATGCGCACTGGCTGGAGGAGACGCTGATACATC
TGGGATTGTCTATACGAGCCTGGCAGCGCTTACTGAAGGTTGCCCGTACCATTGCCGATCTGGAACAAACGGAGAATATT
ACGCGCCTGCATTTGCAGGAGGCTGTGGGCTATCGGGCAATAGACAGGCTACTGATTCATTTACAAAAACTACTGACGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.594

100

0.593
  comM Vibrio cholerae strain A1552

59.562

99.209

0.591
  comM Glaesserella parasuis strain SC1401

58.546

100

0.589
  comM Vibrio campbellii strain DS40M4

58.566

99.209

0.581
  comM Legionella pneumophila str. Paris

47.2

98.814

0.466
  comM Legionella pneumophila strain ERS1305867

47.2

98.814

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.135

99.407

0.439