Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R1158_RS20730 Genome accession   NZ_CP136810
Coordinates   4370410..4370916 (-) Length   168 a.a.
NCBI ID   WP_317424401.1    Uniprot ID   -
Organism   Citrobacter koseri strain K1721     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4365410..4375916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1158_RS20715 (R1158_20715) fecE 4365420..4366187 (+) 768 WP_049011979.1 Fe(3+) dicitrate ABC transporter ATP-binding protein FecE -
  R1158_RS20720 (R1158_20720) - 4366643..4369360 (+) 2718 WP_394805300.1 cation-transporting P-type ATPase -
  R1158_RS20725 (R1158_20725) - 4369718..4370149 (-) 432 WP_115609762.1 universal stress protein -
  R1158_RS20730 (R1158_20730) ssb 4370410..4370916 (-) 507 WP_317424401.1 single-stranded DNA-binding protein SSB1 Machinery gene
  R1158_RS20735 (R1158_20735) uvrA 4371167..4373989 (+) 2823 WP_012134614.1 excinuclease ABC subunit UvrA -
  R1158_RS20740 (R1158_20740) - 4374072..4374428 (-) 357 WP_317424402.1 MmcQ/YjbR family DNA-binding protein -
  R1158_RS20745 (R1158_20745) aphA 4374678..4375391 (-) 714 WP_199971709.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18340.30 Da        Isoelectric Point: 5.2358

>NTDB_id=892914 R1158_RS20730 WP_317424401.1 4370410..4370916(-) (ssb) [Citrobacter koseri strain K1721]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAPSNEPPM
DFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=892914 R1158_RS20730 WP_317424401.1 4370410..4370916(-) (ssb) [Citrobacter koseri strain K1721]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAGCAGACCGGTGAGATGAAAGAGCAGACGG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTACATT
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAGTCCGGTCAGGACAAATACACCACTGAAGTGGTGGTCAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGTCAGCAGCAGGGCGGTTGGGGTCAGCCTCAGCAACCGCAGG
GCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCACAGCAACAATCCGCTCCGGCACCGTCTAACGAACCGCCAATG
GATTTTGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.333

100

0.786
  ssb Glaesserella parasuis strain SC1401

58.011

100

0.625
  ssb Neisseria meningitidis MC58

45.455

100

0.476
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.476
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.381