Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R1016_RS20385 Genome accession   NZ_CP136808
Coordinates   4300549..4301085 (-) Length   178 a.a.
NCBI ID   WP_047459655.1    Uniprot ID   A0AAW7F306
Organism   Citrobacter koseri strain K1018     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4295549..4306085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1016_RS20375 (R1016_20375) - 4296454..4299162 (+) 2709 WP_071257677.1 cation-transporting P-type ATPase -
  R1016_RS20380 (R1016_20380) - 4299856..4300287 (-) 432 WP_012134612.1 universal stress protein -
  R1016_RS20385 (R1016_20385) ssb 4300549..4301085 (-) 537 WP_047459655.1 single-stranded DNA-binding protein SSB1 Machinery gene
  R1016_RS20390 (R1016_20390) uvrA 4301336..4304158 (+) 2823 WP_012134614.1 excinuclease ABC subunit UvrA -
  R1016_RS20395 (R1016_20395) - 4304254..4304610 (-) 357 WP_012134615.1 MmcQ/YjbR family DNA-binding protein -
  R1016_RS20400 (R1016_20400) aphA 4304813..4305526 (-) 714 WP_012134616.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19110.13 Da        Isoelectric Point: 5.2358

>NTDB_id=892891 R1016_RS20385 WP_047459655.1 4300549..4301085(-) (ssb) [Citrobacter koseri strain K1018]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQS
APAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=892891 R1016_RS20385 WP_047459655.1 4300549..4301085(-) (ssb) [Citrobacter koseri strain K1018]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAGCAGACCGGTGAGATGAAAGAGCAGACGG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTACATT
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAGTCCGGTCAGGACAAATACACCACTGAAGTGGTGGTCAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCTCCGGCTGGCGGCAATATGGGCGGCGGTCAGCAGCAGG
GTGGTTGGGGTCAGCCTCAGCAACCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAACAATCC
GCTCCGGCACCGTCTAACGAACCGCCAATGGATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.764
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

46.111

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.111

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.371