Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   RYQ61_RS06410 Genome accession   NZ_CP136799
Coordinates   1235905..1236588 (-) Length   227 a.a.
NCBI ID   WP_003073610.1    Uniprot ID   A0AAE8KBD8
Organism   Streptococcus intermedius strain XH2169     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1230905..1241588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS06380 (RYQ61_06380) rsmD 1231385..1231924 (+) 540 WP_048784924.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RYQ61_RS06385 (RYQ61_06385) coaD 1231914..1232411 (+) 498 WP_003078294.1 pantetheine-phosphate adenylyltransferase -
  RYQ61_RS06390 (RYQ61_06390) sepM 1232392..1233447 (+) 1056 WP_102567779.1 SepM family pheromone-processing serine protease Regulator
  RYQ61_RS06395 (RYQ61_06395) - 1233729..1234292 (+) 564 WP_003073618.1 YutD family protein -
  RYQ61_RS06400 (RYQ61_06400) rlmN 1234326..1235408 (+) 1083 WP_003073615.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  RYQ61_RS06405 (RYQ61_06405) - 1235401..1235919 (+) 519 WP_003078328.1 VanZ family protein -
  RYQ61_RS06410 (RYQ61_06410) cclA/cilC 1235905..1236588 (-) 684 WP_003073610.1 A24 family peptidase Machinery gene
  RYQ61_RS06415 (RYQ61_06415) - 1236739..1237266 (+) 528 WP_003073607.1 Dps family protein -
  RYQ61_RS06420 (RYQ61_06420) - 1237529..1237753 (+) 225 WP_003073604.1 YqgQ family protein -
  RYQ61_RS06425 (RYQ61_06425) - 1237747..1238127 (+) 381 WP_048784911.1 rhodanese-like domain-containing protein -
  RYQ61_RS06430 (RYQ61_06430) - 1238148..1238873 (-) 726 WP_021003027.1 16S rRNA pseudouridine(516) synthase -
  RYQ61_RS06435 (RYQ61_06435) typA 1239054..1240895 (+) 1842 WP_003073597.1 translational GTPase TypA -
  RYQ61_RS06440 (RYQ61_06440) - 1240958..1241242 (+) 285 WP_003073594.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25602.95 Da        Isoelectric Point: 8.2377

>NTDB_id=892733 RYQ61_RS06410 WP_003073610.1 1235905..1236588(-) (cclA/cilC) [Streptococcus intermedius strain XH2169]
MVHFYFFLVGSIVASFLGLVVDRFPEQSIIVPSSHCNTCGQKLTPRDLVPILSQLINRLRCRFCGEKIPIRYILLELTGG
CLFLVTSLGYLNINQLILLVSGMTLSLYDQRHQEYPLLIWLFSHVLLLFLTGFNLLMAIFLALGILTHFIDLRIGAGDFL
FLASCSAIFNLTEVLLVLQISSIIGLFLFCLKSRKDRLAFIPCLFGASSILILIKFVVFHQNILCLI

Nucleotide


Download         Length: 684 bp        

>NTDB_id=892733 RYQ61_RS06410 WP_003073610.1 1235905..1236588(-) (cclA/cilC) [Streptococcus intermedius strain XH2169]
ATGGTTCATTTTTATTTTTTCTTAGTTGGAAGTATTGTGGCTTCCTTTTTAGGCCTGGTCGTTGATCGCTTTCCTGAACA
ATCTATTATCGTTCCTTCCAGTCATTGCAATACTTGTGGACAAAAATTAACTCCACGTGATTTAGTCCCTATCCTCTCAC
AACTCATCAATCGTCTACGTTGTCGCTTTTGTGGTGAAAAAATTCCCATCCGCTACATTCTCCTAGAACTAACTGGTGGT
TGTCTCTTTCTTGTAACGTCTTTAGGCTATCTAAACATCAACCAGCTCATCCTGCTTGTATCTGGGATGACCTTATCCCT
TTATGATCAGAGACATCAAGAGTATCCTCTGCTTATTTGGCTATTTTCCCATGTCCTTCTTCTCTTTTTAACTGGTTTCA
ATCTTTTGATGGCTATTTTTTTAGCCCTTGGAATTTTAACTCATTTCATTGATTTGCGCATTGGAGCGGGAGATTTTCTT
TTTCTAGCATCCTGTTCAGCGATTTTTAATCTCACAGAAGTTCTCCTTGTTCTTCAAATTTCCAGCATCATCGGCCTGTT
CCTTTTTTGTTTAAAGTCAAGAAAAGACAGGTTAGCATTTATTCCCTGTCTTTTTGGTGCTAGCAGCATTCTGATTTTGA
TAAAATTCGTTGTTTTCCACCAAAATATTTTATGCCTTATTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

56.279

94.714

0.533
  cclA/cilC Streptococcus mitis NCTC 12261

55.349

94.714

0.524
  cclA/cilC Streptococcus pneumoniae Rx1

54.884

94.714

0.52
  cclA/cilC Streptococcus pneumoniae D39

54.884

94.714

0.52
  cclA/cilC Streptococcus pneumoniae R6

54.884

94.714

0.52
  cclA/cilC Streptococcus pneumoniae TIGR4

54.419

94.714

0.515