Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   RYQ61_RS06390 Genome accession   NZ_CP136799
Coordinates   1232392..1233447 (+) Length   351 a.a.
NCBI ID   WP_102567779.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1227392..1238447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS06360 (RYQ61_06360) - 1227910..1228545 (-) 636 WP_048784930.1 YigZ family protein -
  RYQ61_RS06365 (RYQ61_06365) comFA/cflA 1228602..1229903 (+) 1302 WP_048784928.1 DEAD/DEAH box helicase Machinery gene
  RYQ61_RS06370 (RYQ61_06370) - 1229900..1230565 (+) 666 WP_102567780.1 ComF family protein -
  RYQ61_RS06375 (RYQ61_06375) hpf 1230644..1231186 (+) 543 WP_003073626.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  RYQ61_RS06380 (RYQ61_06380) rsmD 1231385..1231924 (+) 540 WP_048784924.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RYQ61_RS06385 (RYQ61_06385) coaD 1231914..1232411 (+) 498 WP_003078294.1 pantetheine-phosphate adenylyltransferase -
  RYQ61_RS06390 (RYQ61_06390) sepM 1232392..1233447 (+) 1056 WP_102567779.1 SepM family pheromone-processing serine protease Regulator
  RYQ61_RS06395 (RYQ61_06395) - 1233729..1234292 (+) 564 WP_003073618.1 YutD family protein -
  RYQ61_RS06400 (RYQ61_06400) rlmN 1234326..1235408 (+) 1083 WP_003073615.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  RYQ61_RS06405 (RYQ61_06405) - 1235401..1235919 (+) 519 WP_003078328.1 VanZ family protein -
  RYQ61_RS06410 (RYQ61_06410) cclA/cilC 1235905..1236588 (-) 684 WP_003073610.1 A24 family peptidase Machinery gene
  RYQ61_RS06415 (RYQ61_06415) - 1236739..1237266 (+) 528 WP_003073607.1 Dps family protein -
  RYQ61_RS06420 (RYQ61_06420) - 1237529..1237753 (+) 225 WP_003073604.1 YqgQ family protein -
  RYQ61_RS06425 (RYQ61_06425) - 1237747..1238127 (+) 381 WP_048784911.1 rhodanese-like domain-containing protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38504.52 Da        Isoelectric Point: 10.2603

>NTDB_id=892732 RYQ61_RS06390 WP_102567779.1 1232392..1233447(+) (sepM) [Streptococcus intermedius strain XH2169]
MKKTRNKFKKWPIVFVVGLVLLFISFVVPLPYYIEVPGSAADVRQVLRVDNKEDKEKGSYNFVTVGIQHATFAHLVYAWL
TPFTDIYSAKDLTGGTSDKEYMRINQFYMETSQNLAKYQGLKKAGKDISLKYLGVYVLQVTKNSTFKGILNIADTVTGVN
DKTFNSSKDLIDYVGSQKIGSKVKVNYVEDGQKKSAIGKIIKLENGKNGIGISLIDRTEVTSSIPIEFSTAGIGGPSAGL
MFSLAIYTQIAEPTLRDGRNIAGTGSIDREGKVGDIGGIDKKVVSAAKNGAEIFFAPNNPVTKEAKKANSKAKTNYETAL
EAAKKIKTKMKIVPVKNLQDAIDYLKRTKKS

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=892732 RYQ61_RS06390 WP_102567779.1 1232392..1233447(+) (sepM) [Streptococcus intermedius strain XH2169]
ATGAAAAAAACAAGAAATAAATTTAAAAAATGGCCGATAGTATTTGTGGTAGGGTTGGTCCTTCTTTTTATCTCTTTTGT
AGTTCCTCTGCCTTATTATATTGAAGTACCAGGTAGTGCAGCAGACGTCCGTCAGGTTTTGCGTGTGGATAACAAAGAAG
ATAAGGAAAAAGGTTCTTACAATTTTGTGACAGTTGGGATTCAGCATGCTACCTTTGCTCATTTAGTTTATGCTTGGCTG
ACCCCTTTTACAGATATTTATTCAGCGAAAGATTTGACTGGCGGAACTTCCGATAAAGAATATATGCGAATCAATCAATT
TTATATGGAAACATCACAAAACTTAGCCAAATATCAAGGGTTAAAAAAAGCAGGAAAGGATATCAGCCTGAAATATTTGG
GCGTCTATGTGTTACAAGTTACCAAAAACTCAACCTTTAAGGGCATTTTAAATATTGCAGATACTGTGACAGGTGTGAAT
GATAAGACTTTTAATAGTTCAAAAGACTTGATTGATTATGTAGGTTCACAGAAGATTGGTAGTAAGGTAAAAGTAAATTA
TGTTGAAGACGGTCAGAAAAAATCTGCTATAGGTAAAATCATCAAACTTGAAAATGGGAAAAATGGAATTGGTATTAGCT
TGATTGACCGGACAGAGGTTACAAGTAGTATACCGATTGAATTCTCAACTGCGGGAATTGGCGGACCAAGTGCGGGCTTG
ATGTTTAGTTTGGCAATTTATACACAGATTGCTGAACCAACATTAAGAGACGGTAGAAATATTGCTGGTACGGGCTCAAT
TGACCGTGAAGGAAAAGTTGGCGATATTGGAGGCATTGATAAAAAGGTGGTCTCGGCAGCCAAAAATGGTGCAGAAATTT
TCTTTGCACCAAATAATCCAGTCACCAAAGAAGCTAAAAAAGCCAATTCTAAAGCGAAAACAAATTATGAAACAGCTTTG
GAAGCTGCTAAAAAAATTAAAACCAAAATGAAAATTGTGCCTGTCAAGAACTTGCAAGATGCTATTGATTACCTCAAACG
CACCAAGAAATCTTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(234-300)

PDZ domain (PDZ_2)

(133-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

63.478

98.291

0.624