Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD1   Type   Regulator
Locus tag   RYQ61_RS04060 Genome accession   NZ_CP136799
Coordinates   770219..771544 (-) Length   441 a.a.
NCBI ID   WP_003075490.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 765219..776544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS04040 (RYQ61_04040) - 766570..769146 (+) 2577 WP_102568365.1 YfhO family protein -
  RYQ61_RS04055 (RYQ61_04055) comE 769470..770219 (-) 750 WP_048784767.1 competence system response regulator transcription factor ComE Regulator
  RYQ61_RS04060 (RYQ61_04060) comD/comD1 770219..771544 (-) 1326 WP_003075490.1 GHKL domain-containing protein Regulator
  RYQ61_RS04065 (RYQ61_04065) - 771561..771707 (-) 147 WP_003075491.1 bacteriocin -
  RYQ61_RS04075 (RYQ61_04075) rlmH 771984..772463 (-) 480 WP_003075603.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  RYQ61_RS04080 (RYQ61_04080) htrA 772667..773866 (+) 1200 WP_317289752.1 trypsin-like peptidase domain-containing protein Regulator
  RYQ61_RS04085 (RYQ61_04085) spo0J 773921..774688 (+) 768 WP_003075591.1 ParB/RepB/Spo0J family partition protein Regulator
  RYQ61_RS04090 (RYQ61_04090) dnaA 774914..776257 (+) 1344 WP_048784762.1 chromosomal replication initiator protein DnaA -

Sequence

Protein


Download         Length: 441 a.a.        Molecular weight: 51896.76 Da        Isoelectric Point: 8.7063

>NTDB_id=892716 RYQ61_RS04060 WP_003075490.1 770219..771544(-) (comD/comD1) [Streptococcus intermedius strain XH2169]
MVKIEFIYWVIFSIIEAISVVYCYKKISRVNKVNIHFTLLCLGIVFLTDFTTIIHYSVRYIMFFIQPLFFYLYFVKVKKV
KKHSSLFLALFLSLAVSGSETFFSVIISSVTGDKFVDRYWGLFYIFINIISLVFILKAIDYFKFNFKYFKKIDFKENIVQ
LNFYLLFIHLLLNISHWLSNMKNLNSFSSMIATICFLMFMSILFYLQSIREKYEKEEQIKQKEQEQLQLQKYTDEIVNLY
NEIRGFRHDYGGMLASFQSAIHTGDIKEVERIYQEVLVNANLQLRSDKYTYFDLNNVGDSALRSVMTQTLFKARDYNIEL
TFEVKDFVKPLPIKLLDLVRMTSVLLNNAIEGAAESYQKTMNVSLVDLDTETILVIQNSRKKRPLDLEEIYQTDFSTKGV
GRGLGLSNIKEIINNYEGIILDTKIEDEYFIQAMRVRKEGL

Nucleotide


Download         Length: 1326 bp        

>NTDB_id=892716 RYQ61_RS04060 WP_003075490.1 770219..771544(-) (comD/comD1) [Streptococcus intermedius strain XH2169]
ATGGTGAAAATAGAATTTATATATTGGGTTATATTCTCCATTATAGAAGCTATTTCTGTTGTATATTGTTATAAGAAGAT
AAGTAGAGTGAATAAAGTGAATATTCACTTTACTTTATTATGTTTAGGAATTGTATTTTTGACTGATTTTACTACAATAA
TACATTATTCGGTTAGATATATAATGTTTTTTATTCAACCATTATTTTTTTATTTATACTTTGTTAAAGTAAAAAAAGTT
AAAAAACATTCGTCTTTATTTTTAGCACTATTTTTATCTTTAGCTGTATCAGGTTCTGAAACCTTCTTTTCAGTTATTAT
TTCTTCTGTTACAGGTGATAAGTTTGTTGATAGATATTGGGGATTGTTCTATATTTTTATTAATATTATTTCTTTAGTTT
TCATTTTAAAAGCAATTGATTATTTTAAGTTTAATTTTAAATATTTTAAAAAGATAGATTTTAAAGAAAATATTGTACAA
TTAAATTTTTATCTATTATTTATTCATCTTTTATTAAATATATCGCATTGGCTTAGTAACATGAAAAATTTAAATAGTTT
TTCTAGTATGATTGCTACAATTTGCTTTTTAATGTTTATGTCAATTTTGTTCTACTTACAATCTATTCGCGAAAAATATG
AAAAAGAAGAACAAATTAAGCAAAAAGAACAGGAACAACTGCAATTACAAAAATATACAGATGAAATTGTTAATCTGTAT
AATGAAATTCGAGGTTTTCGTCATGATTATGGTGGGATGTTGGCAAGTTTTCAATCAGCTATTCATACAGGTGATATAAA
AGAAGTGGAGCGAATCTATCAGGAGGTTCTCGTAAATGCTAATTTACAGCTTCGTTCTGATAAATATACGTATTTTGATT
TAAATAATGTTGGAGATTCAGCACTTAGAAGTGTTATGACGCAAACATTGTTTAAGGCACGAGATTACAATATAGAATTA
ACATTTGAAGTAAAAGATTTTGTTAAACCTTTGCCAATTAAATTGTTAGATTTGGTTAGAATGACAAGTGTCCTTTTAAA
TAATGCAATAGAGGGAGCGGCAGAGAGTTATCAAAAAACGATGAATGTTTCTTTAGTAGATCTGGATACAGAAACGATCT
TAGTTATTCAAAATTCACGTAAGAAAAGACCTCTAGATTTGGAAGAAATATACCAAACTGATTTTTCAACAAAGGGTGTG
GGACGCGGTTTAGGTTTAAGTAATATTAAAGAAATTATTAATAACTATGAAGGAATTATTCTGGATACTAAAATCGAAGA
TGAATATTTTATACAAGCAATGAGAGTAAGGAAAGAAGGTTTATAA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(334-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD1 Streptococcus gordonii str. Challis substr. CH1

54.795

99.32

0.544
  comD/comD2 Streptococcus gordonii strain NCTC7865

54.299

100

0.544
  comD Streptococcus mitis SK321

46.939

88.889

0.417
  comD Streptococcus mitis NCTC 12261

48.404

85.261

0.413
  comD/comD2 Streptococcus pneumoniae TIGR4

47.872

85.261

0.408
  comD/comD1 Streptococcus pneumoniae Rx1

47.34

85.261

0.404
  comD/comD1 Streptococcus pneumoniae D39

47.34

85.261

0.404
  comD/comD1 Streptococcus pneumoniae R6

47.34

85.261

0.404