Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   RYQ61_RS04085 Genome accession   NZ_CP136799
Coordinates   773921..774688 (+) Length   255 a.a.
NCBI ID   WP_003075591.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 768921..779688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS04055 (RYQ61_04055) comE 769470..770219 (-) 750 WP_048784767.1 competence system response regulator transcription factor ComE Regulator
  RYQ61_RS04060 (RYQ61_04060) comD/comD1 770219..771544 (-) 1326 WP_003075490.1 GHKL domain-containing protein Regulator
  RYQ61_RS04065 (RYQ61_04065) - 771561..771707 (-) 147 WP_003075491.1 bacteriocin -
  RYQ61_RS04075 (RYQ61_04075) rlmH 771984..772463 (-) 480 WP_003075603.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  RYQ61_RS04080 (RYQ61_04080) htrA 772667..773866 (+) 1200 WP_317289752.1 trypsin-like peptidase domain-containing protein Regulator
  RYQ61_RS04085 (RYQ61_04085) spo0J 773921..774688 (+) 768 WP_003075591.1 ParB/RepB/Spo0J family partition protein Regulator
  RYQ61_RS04090 (RYQ61_04090) dnaA 774914..776257 (+) 1344 WP_048784762.1 chromosomal replication initiator protein DnaA -
  RYQ61_RS04095 (RYQ61_04095) dnaN 776413..777549 (+) 1137 WP_048784760.1 DNA polymerase III subunit beta -
  RYQ61_RS04100 (RYQ61_04100) - 777549..777746 (+) 198 WP_003075608.1 DUF951 domain-containing protein -
  RYQ61_RS04105 (RYQ61_04105) - 777769..778269 (-) 501 WP_021002257.1 DUF1307 domain-containing protein -
  RYQ61_RS04110 (RYQ61_04110) ychF 778415..779530 (+) 1116 WP_096362326.1 redox-regulated ATPase YchF -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29660.13 Da        Isoelectric Point: 9.5403

>NTDB_id=892718 RYQ61_RS04085 WP_003075591.1 773921..774688(+) (spo0J) [Streptococcus intermedius strain XH2169]
MEKYQYITLNDIQTNPYQPRKEFSEEKITELANSIKEHGIIQPIIVRKSPIIGYELLAGERRFRAAKLAGLTNIPAIIKE
LTDDEMIKQAIIENLQREDLNPIEEAQSYQYLIDKGLTHKEIALTMGKSRPYITNSIRLLNLPSNIIEAVKEGNISQGHA
RLLINLSEKEQNHWFKKILSQELSVRKLEKQLHPKRTKTVTKNKNQLFIKEEEERLKKIFGTDISLQFSKQSQSGKICIH
FSNQEEYQRIIDSFT

Nucleotide


Download         Length: 768 bp        

>NTDB_id=892718 RYQ61_RS04085 WP_003075591.1 773921..774688(+) (spo0J) [Streptococcus intermedius strain XH2169]
ATGGAAAAATATCAATACATTACACTTAATGACATACAAACCAATCCTTATCAACCAAGAAAAGAATTTTCAGAAGAAAA
AATTACTGAACTTGCTAATTCTATAAAAGAACATGGAATTATTCAGCCCATCATTGTACGAAAATCTCCAATAATTGGTT
ATGAATTACTAGCTGGTGAAAGACGTTTTAGAGCTGCTAAATTAGCAGGTTTAACTAATATACCAGCTATTATAAAAGAA
TTAACAGATGATGAAATGATAAAGCAAGCTATCATTGAAAATTTACAAAGAGAAGACCTCAATCCTATAGAAGAAGCACA
ATCTTATCAATATTTAATTGACAAGGGATTGACACACAAAGAAATCGCTCTAACAATGGGAAAATCTCGCCCTTACATTA
CAAATTCTATTCGTTTATTAAATTTACCATCCAATATAATTGAAGCAGTAAAAGAAGGAAATATCTCTCAAGGACATGCT
CGCCTGCTTATCAATCTCTCAGAAAAAGAGCAAAATCACTGGTTTAAAAAAATTCTATCTCAAGAACTTTCAGTTAGAAA
ACTAGAAAAACAATTGCACCCAAAACGAACAAAAACTGTAACAAAAAATAAAAATCAACTTTTTATTAAAGAAGAAGAAG
AAAGGTTAAAAAAGATATTTGGTACAGATATTTCACTCCAATTTTCCAAGCAGTCTCAATCTGGAAAAATCTGTATTCAC
TTTTCAAATCAAGAAGAATATCAAAGAATTATTGACAGCTTTACATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(146-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

51.953

100

0.522