Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RYQ61_RS01830 Genome accession   NZ_CP136799
Coordinates   349434..351410 (-) Length   658 a.a.
NCBI ID   WP_003076197.1    Uniprot ID   A0AAD1FJY5
Organism   Streptococcus intermedius strain XH2169     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 344434..356410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS01815 (RYQ61_01815) amiD 344462..345388 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  RYQ61_RS01820 (RYQ61_01820) amiC 345388..346884 (-) 1497 WP_096363109.1 ABC transporter permease Regulator
  RYQ61_RS01825 (RYQ61_01825) amiA3 347258..349237 (-) 1980 WP_102568257.1 peptide ABC transporter substrate-binding protein Regulator
  RYQ61_RS01830 (RYQ61_01830) amiA3 349434..351410 (-) 1977 WP_003076197.1 peptide ABC transporter substrate-binding protein Regulator
  RYQ61_RS01835 (RYQ61_01835) - 351569..352258 (-) 690 WP_317289737.1 phenylalanine--tRNA ligase beta subunit-related protein -
  RYQ61_RS01840 (RYQ61_01840) - 352421..354031 (-) 1611 WP_102568259.1 CTP synthase -
  RYQ61_RS01845 (RYQ61_01845) rpoE 354274..354861 (-) 588 WP_003074392.1 DNA-directed RNA polymerase subunit delta -
  RYQ61_RS01850 (RYQ61_01850) tig 355099..356382 (-) 1284 WP_009569331.1 trigger factor -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72211.02 Da        Isoelectric Point: 9.2806

>NTDB_id=892699 RYQ61_RS01830 WP_003076197.1 349434..351410(-) (amiA3) [Streptococcus intermedius strain XH2169]
MKKGKIIAVAGLALLTSGLLAACSGSKSNSAETKFGYVYSGDPETLDYVTSGKATTSDLVTNGVDGLLENDKYGNLVPSM
AKSWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADKKSEALYLVQNSIKGLDAYVNGQTKDFSTVGV
KAVDDYTVQYTLNKPEPYWNSKTTSAIMWPINAEFLKSKGNKFGQSTDPNSILYNGPFLMKAITAKSAVEYVKNKHYWDK
DKVKVDKIKLAYYDGQDQDSLARNFKDGAYSYARLFPTSSNFATFEKQFKDNIYTAEAGAGTAALALNIDRQSYKHTAKK
TDEQKNSTKKALLNKDFRQALNFALDRESYAAQVNGKAGAATAIRNMFVPSNFVQVGEKSFGDAVEEKLASYGDTWKGVK
LADSQNGLYNPTKAKEKFAKAKAALQAQGVQFPIHLDVPTVETSKSYVARMQSLKQSVEKVLGKENVVMDLNMMSEDDFN
NITYYAPNAAGEDWDISGAVGWSPDYQDPSTYLDILKSTASDNTKTWFGFDSGSENAGAKAVGLDEYNKLVDEAGAETTD
IAKRYEKYAAAQAWLTDSSLVLPTMASTGAGTFVSRIQPFSGAFAQTGSKGSLTYYKYIKVGKDAVTKKDYEAAKKKWQK
EKAESNKKAQDKLADHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=892699 RYQ61_RS01830 WP_003076197.1 349434..351410(-) (amiA3) [Streptococcus intermedius strain XH2169]
ATGAAAAAAGGTAAAATCATCGCAGTTGCGGGGTTAGCTCTTTTAACTTCTGGCCTTTTAGCTGCTTGCTCGGGTTCGAA
ATCGAACTCCGCTGAAACCAAGTTCGGTTATGTGTATTCTGGTGATCCAGAAACTTTGGATTATGTAACATCAGGAAAAG
CAACTACTAGCGATCTTGTGACAAATGGAGTTGACGGATTGTTAGAAAATGACAAATATGGAAATCTTGTACCATCAATG
GCTAAGTCATGGACTGTATCAAAAGATGGTTTAACCTATACTTATAAACTTCGTAAGGGTGCCAAATGGTACACATCAGA
AGGTGAAGAGTATGCTGAAGTCAAGGCGCAAGATTTTGTAACTGGACTGAAACATGCTGCCGATAAAAAATCTGAAGCTC
TTTATTTGGTTCAAAATTCAATTAAAGGTTTAGATGCTTACGTGAATGGTCAAACAAAAGATTTTTCAACAGTAGGTGTG
AAAGCAGTTGATGACTATACTGTTCAGTATACATTGAACAAGCCAGAACCATATTGGAATTCCAAGACCACCTCTGCCAT
TATGTGGCCAATCAATGCCGAATTTTTGAAATCTAAAGGAAATAAATTTGGCCAATCAACAGATCCTAATTCTATCCTTT
ATAATGGGCCATTCCTGATGAAAGCTATCACAGCGAAATCTGCAGTAGAATATGTTAAAAATAAACATTATTGGGATAAA
GATAAAGTAAAAGTTGATAAGATTAAACTTGCTTACTATGATGGTCAAGACCAAGACTCTCTTGCGCGTAACTTTAAAGA
TGGAGCTTACTCTTATGCTCGTCTCTTCCCAACAAGCTCAAACTTTGCAACTTTTGAAAAGCAGTTCAAAGATAATATCT
ATACTGCAGAAGCAGGTGCAGGAACAGCAGCTTTAGCATTGAATATCGATCGTCAATCATACAAGCATACTGCCAAAAAG
ACAGATGAGCAAAAGAATTCAACGAAAAAAGCATTGTTGAACAAAGACTTCCGCCAAGCTCTAAACTTTGCACTGGATCG
TGAATCTTACGCAGCACAAGTCAATGGTAAAGCTGGAGCTGCCACAGCAATCCGCAATATGTTTGTGCCATCTAACTTTG
TTCAAGTTGGTGAAAAATCATTTGGTGATGCTGTAGAAGAAAAATTAGCGAGCTATGGTGATACATGGAAGGGTGTTAAA
CTAGCTGATTCACAAAACGGCTTGTACAATCCAACAAAAGCAAAAGAAAAATTTGCAAAAGCAAAAGCAGCTTTGCAAGC
TCAAGGTGTACAGTTCCCAATCCACTTAGATGTTCCTACTGTGGAAACTTCTAAGAGCTATGTTGCTCGGATGCAGTCTT
TAAAACAATCTGTTGAAAAAGTACTTGGCAAAGAAAATGTTGTCATGGACTTGAATATGATGTCAGAAGACGACTTTAAT
AACATCACTTACTATGCTCCAAACGCAGCTGGAGAAGACTGGGATATTTCAGGTGCTGTTGGTTGGAGTCCTGATTATCA
AGATCCATCTACTTATCTTGATATTTTGAAATCAACGGCTTCTGACAATACGAAGACTTGGTTTGGATTTGACTCTGGTA
GTGAAAATGCTGGTGCTAAAGCAGTTGGCTTGGACGAATATAATAAATTAGTTGATGAAGCAGGTGCAGAAACAACAGAC
ATTGCAAAACGTTATGAAAAATATGCAGCAGCACAAGCTTGGTTAACAGACAGTTCACTTGTCTTACCAACAATGGCTTC
AACAGGTGCCGGAACTTTTGTGTCACGCATTCAACCGTTCTCAGGTGCATTTGCGCAAACAGGTAGTAAAGGTAGCTTAA
CCTACTATAAATACATTAAAGTCGGTAAAGATGCTGTCACGAAGAAAGACTATGAAGCAGCTAAGAAGAAATGGCAAAAA
GAAAAGGCCGAATCTAATAAAAAAGCTCAAGATAAATTAGCTGATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

63.885

100

0.64
  amiA3 Streptococcus thermophilus LMG 18311

63.581

100

0.637
  amiA Streptococcus salivarius strain HSISS4

62.614

100

0.626