Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RYQ61_RS01825 Genome accession   NZ_CP136799
Coordinates   347258..349237 (-) Length   659 a.a.
NCBI ID   WP_102568257.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 342258..354237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS01805 (RYQ61_01805) amiF 342452..343375 (-) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  RYQ61_RS01810 (RYQ61_01810) amiE 343386..344453 (-) 1068 WP_009569325.1 ABC transporter ATP-binding protein Regulator
  RYQ61_RS01815 (RYQ61_01815) amiD 344462..345388 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  RYQ61_RS01820 (RYQ61_01820) amiC 345388..346884 (-) 1497 WP_096363109.1 ABC transporter permease Regulator
  RYQ61_RS01825 (RYQ61_01825) amiA3 347258..349237 (-) 1980 WP_102568257.1 peptide ABC transporter substrate-binding protein Regulator
  RYQ61_RS01830 (RYQ61_01830) amiA3 349434..351410 (-) 1977 WP_003076197.1 peptide ABC transporter substrate-binding protein Regulator
  RYQ61_RS01835 (RYQ61_01835) - 351569..352258 (-) 690 WP_317289737.1 phenylalanine--tRNA ligase beta subunit-related protein -
  RYQ61_RS01840 (RYQ61_01840) - 352421..354031 (-) 1611 WP_102568259.1 CTP synthase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73391.14 Da        Isoelectric Point: 8.8109

>NTDB_id=892698 RYQ61_RS01825 WP_102568257.1 347258..349237(-) (amiA3) [Streptococcus intermedius strain XH2169]
MKKSKIIALTAVALFATGTLAACSGSKTGSSNKTFSYVYEQDPDNLDYLTTGKASTSNITSNVIDGLLENDRYGNLIPSV
AKDWTVSKDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADKKSDAIYLVQDSIKGLDAYMKGENKDFSAVGI
KAVDDYTVQYTLNRPESFWNSKTTMGVLAPVNAEFLKSKGNKFAQATDPSSILYNGPYLLKSITAKSSVEFAKNPNYWDK
KNVHIDHIKLSYYDGQDQDKLAKGFSDGSFTNAKVFPTSPSYASVSKKYKNNIVYTPQDATTYLVATNIDRQSYNHTSKT
TDAQKTSTKKALLNKDFRQAITFAFDRTAYASQVNGKDGATKMLRNLFVPPTFVQTDDKNFGELVKEKLVGYDESWKDVN
LNDAQDGLYNPTKAKEKLAKAKAALQADGVQFPIHIDMPVDQTATNKVQRVQSLKQSIEKNLGKENVVIDIQQMSKDDVN
NITYFAESAAAEDWDLSDNVGWSPDFQDPSTYLDVIKPSSGENTKTYLGFDSGKNNAAAAQVGMNEYEKLLNEAEKETTN
TNARYEKYAAAQAWLTDNALVIPTTTLTGRPILSRTVPFTNPFAWSGNKGNSEIILYKYLELQDKPVTQDQYKKAMTKWN
KERSKSNKKAQEELADHIK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=892698 RYQ61_RS01825 WP_102568257.1 347258..349237(-) (amiA3) [Streptococcus intermedius strain XH2169]
ATGAAGAAAAGTAAAATCATTGCCTTAACGGCTGTTGCCTTATTCGCGACGGGGACATTAGCGGCTTGTTCTGGTTCTAA
AACAGGTTCTAGTAACAAAACGTTTTCGTATGTTTATGAACAAGATCCGGATAATCTAGATTATCTGACAACTGGGAAGG
CCTCTACTTCAAACATTACAAGTAACGTCATTGATGGCCTCTTGGAAAATGACCGTTATGGGAACTTAATTCCTTCTGTG
GCAAAAGATTGGACCGTCTCTAAAGACGGCTTGACTTACACTTACAAACTTCGCAAGGGAGTTAAATGGTATACTTCAGA
AGGGGAAGAGTATGCAGAAGTTAAAGCGCAAGACTTTGTGACAGGTTTGAAACACGCTGCAGATAAGAAATCCGATGCCA
TTTATTTGGTGCAAGATTCCATTAAAGGTTTGGATGCTTATATGAAAGGTGAAAATAAAGATTTTTCTGCTGTTGGTATT
AAAGCAGTTGATGATTATACCGTCCAATACACGCTTAATCGACCAGAAAGCTTTTGGAACTCGAAAACAACAATGGGAGT
TTTAGCACCAGTTAATGCAGAATTTTTGAAATCAAAAGGCAATAAATTTGCGCAAGCAACAGATCCATCTAGTATTCTTT
ACAATGGACCTTACTTGCTAAAATCTATCACAGCGAAATCATCTGTTGAATTTGCTAAAAATCCAAACTATTGGGATAAG
AAAAACGTGCACATTGATCACATCAAGTTATCTTACTATGATGGTCAGGATCAGGATAAACTGGCTAAAGGATTTAGCGA
TGGCTCATTTACCAATGCCAAAGTATTTCCAACCAGTCCAAGTTATGCTTCTGTCAGCAAGAAATACAAAAACAACATCG
TTTATACTCCACAAGATGCAACCACTTATCTAGTGGCTACAAACATCGATCGTCAATCTTACAATCATACATCAAAGACA
ACAGATGCTCAAAAGACATCTACTAAGAAAGCATTATTGAATAAAGATTTCCGTCAAGCAATTACCTTTGCATTTGACCG
TACTGCTTATGCTTCACAGGTGAATGGTAAAGACGGTGCGACGAAGATGCTTCGTAATCTCTTTGTACCGCCAACTTTTG
TTCAAACAGATGATAAGAACTTTGGAGAATTGGTCAAAGAAAAATTAGTTGGTTACGATGAAAGTTGGAAAGATGTCAAT
TTAAATGATGCGCAAGACGGGCTTTACAATCCAACGAAAGCCAAGGAAAAATTAGCTAAAGCCAAAGCAGCGCTTCAAGC
AGACGGTGTTCAATTCCCGATTCACATTGATATGCCAGTTGACCAAACGGCAACGAATAAAGTTCAACGTGTACAATCAT
TGAAACAATCGATTGAAAAGAATCTTGGCAAAGAAAATGTTGTGATTGATATTCAACAAATGTCTAAAGACGATGTAAAT
AATATCACTTACTTTGCTGAATCTGCTGCTGCAGAGGATTGGGATCTTTCAGACAATGTTGGTTGGAGTCCAGATTTCCA
AGATCCATCTACTTATCTTGATGTCATCAAGCCTTCAAGTGGTGAAAATACTAAGACTTATCTAGGATTTGATTCAGGTA
AAAATAATGCTGCTGCGGCACAAGTTGGTATGAATGAATATGAAAAATTACTGAATGAGGCCGAAAAAGAAACCACTAAT
ACGAATGCACGCTATGAAAAATATGCTGCAGCCCAAGCTTGGTTGACTGATAATGCTTTGGTTATTCCGACAACAACCTT
GACTGGTCGTCCAATTCTTTCTCGCACAGTGCCATTTACTAATCCATTTGCTTGGTCAGGAAACAAAGGGAATAGTGAAA
TCATTCTATATAAGTATCTTGAACTCCAAGATAAGCCTGTTACACAAGATCAGTACAAGAAAGCTATGACTAAATGGAAT
AAAGAGCGATCAAAATCTAATAAAAAAGCTCAAGAAGAACTTGCAGATCATATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

61.667

100

0.618
  amiA3 Streptococcus thermophilus LMG 18311

61.061

100

0.612
  amiA Streptococcus salivarius strain HSISS4

60.758

100

0.609