Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   RYQ61_RS01815 Genome accession   NZ_CP136799
Coordinates   344462..345388 (-) Length   308 a.a.
NCBI ID   WP_003074404.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 339462..350388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS01795 (RYQ61_01795) - 340456..341421 (+) 966 WP_102568255.1 LacI family DNA-binding transcriptional regulator -
  RYQ61_RS01800 (RYQ61_01800) - 341507..342325 (-) 819 WP_102568256.1 Cof-type HAD-IIB family hydrolase -
  RYQ61_RS01805 (RYQ61_01805) amiF 342452..343375 (-) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  RYQ61_RS01810 (RYQ61_01810) amiE 343386..344453 (-) 1068 WP_009569325.1 ABC transporter ATP-binding protein Regulator
  RYQ61_RS01815 (RYQ61_01815) amiD 344462..345388 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  RYQ61_RS01820 (RYQ61_01820) amiC 345388..346884 (-) 1497 WP_096363109.1 ABC transporter permease Regulator
  RYQ61_RS01825 (RYQ61_01825) amiA3 347258..349237 (-) 1980 WP_102568257.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34489.54 Da        Isoelectric Point: 9.8589

>NTDB_id=892696 RYQ61_RS01815 WP_003074404.1 344462..345388(-) (amiD) [Streptococcus intermedius strain XH2169]
MATIDKSKFTFVKRDDFASEIIDAPAYSYWKSVMRQFLRKKSTIAMLGILVAIVLMSFIYPIFSNFDFNDVSKVNDFSAR
YIKPNAQYWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGIVIGGIWGISKTVDRVMIEIYNIISNIPPLLIVIV
LTYSIGAGFWNLIFAMTITGWIGIAYNIRIQILRYRDLEYNLASRTLGTPTLKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=892696 RYQ61_RS01815 WP_003074404.1 344462..345388(-) (amiD) [Streptococcus intermedius strain XH2169]
ATGGCTACAATTGATAAAAGTAAGTTCACATTTGTAAAACGCGATGATTTTGCCTCTGAAATAATTGATGCACCAGCTTA
TTCTTACTGGAAATCTGTTATGCGTCAATTCTTAAGGAAAAAATCAACAATTGCTATGTTGGGTATTCTTGTTGCAATTG
TTTTGATGAGTTTCATCTATCCGATTTTTTCAAATTTCGATTTTAATGATGTAAGTAAAGTAAATGATTTTAGTGCTCGT
TATATCAAACCGAATGCTCAATATTGGTTTGGTACAGATAGTAACGGGAAGTCTCTCTTTGACGGAGTGTGGTTTGGAGC
ACGTAACTCTATTCTTATTTCAGTTATTGCAACCGTGATTAACCTTGTGATTGGTATTGTTATTGGTGGCATCTGGGGAA
TTTCAAAAACTGTCGATCGTGTGATGATTGAGATTTATAATATTATTTCTAACATCCCACCGCTTTTGATTGTCATTGTC
TTGACGTACTCAATCGGTGCAGGTTTCTGGAATTTGATTTTTGCCATGACGATTACTGGTTGGATTGGGATTGCTTACAA
CATTCGTATCCAAATTCTACGTTATCGTGATTTAGAATACAACCTCGCCAGTCGTACCTTGGGAACGCCAACGCTTAAAA
TTATTGTGAAAAATATTATGCCACAATTGGTTTCTGTCATTGTGACTACTGCTTCACAATTACTACCAAGTTTCATTTCA
TACGAAGCCTTTCTATCTTTCTTTGGTTTGGGGCTTCCTGTGACGGTGCCAAGTTTAGGGCGTTTGATTTCAGATTATTC
ACAAAACGTTACAACAAATGCATATCTTTTCTGGATTCCATTGACAACTTTAATCTTGGTTTCCCTTTCATTATTCGTTG
TCGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

86.039

100

0.86
  amiD Streptococcus thermophilus LMG 18311

83.442

100

0.834
  amiD Streptococcus thermophilus LMD-9

83.442

100

0.834