Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   RYQ61_RS01805 Genome accession   NZ_CP136799
Coordinates   342452..343375 (-) Length   307 a.a.
NCBI ID   WP_003074407.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 337452..348375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS01790 (RYQ61_01790) - 339021..340475 (+) 1455 WP_102568254.1 sucrose-6-phosphate hydrolase -
  RYQ61_RS01795 (RYQ61_01795) - 340456..341421 (+) 966 WP_102568255.1 LacI family DNA-binding transcriptional regulator -
  RYQ61_RS01800 (RYQ61_01800) - 341507..342325 (-) 819 WP_102568256.1 Cof-type HAD-IIB family hydrolase -
  RYQ61_RS01805 (RYQ61_01805) amiF 342452..343375 (-) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  RYQ61_RS01810 (RYQ61_01810) amiE 343386..344453 (-) 1068 WP_009569325.1 ABC transporter ATP-binding protein Regulator
  RYQ61_RS01815 (RYQ61_01815) amiD 344462..345388 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  RYQ61_RS01820 (RYQ61_01820) amiC 345388..346884 (-) 1497 WP_096363109.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34811.89 Da        Isoelectric Point: 6.1198

>NTDB_id=892694 RYQ61_RS01805 WP_003074407.1 342452..343375(-) (amiF) [Streptococcus intermedius strain XH2169]
MSEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGDIFFDGKRINGKKSKE
EESEIIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERQKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKDLGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDADQHDYSVDKPEMVEIRPGHFVWANKAEVEKYNKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=892694 RYQ61_RS01805 WP_003074407.1 342452..343375(-) (amiF) [Streptococcus intermedius strain XH2169]
ATGTCTGAAAAATTAGTAGAAGTTAAAGATTTGGAGATTTCCTTCGGAGAAGGAAGCAAGAAATTTGTTGCTGTTAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCGCTTGTAGGAGAGTCCGGTTCTGGTAAAACAACAATCGGACGCG
CGATTATTGGTTTGAATAATACTAGTAAGGGAGATATCTTCTTTGATGGAAAAAGAATCAATGGTAAGAAATCAAAAGAA
GAAGAATCAGAAATCATTCGCAAAATTCAGATGATTTTCCAAGATCCTGCTGCTAGTTTGAATGAACGTGCGACGGTTGA
TTACATTATTTCAGAAGGTCTGTATAATTTCCATCTGTTTAAAGATGAAGAAGAACGTCAGAAAAAAGTAAAAGATATTA
TTCATGAGGTAGGGCTGTTATCAGAGCATTTAACTCGCTATCCGCATGAATTCTCGGGTGGTCAGCGTCAGCGGATTGGG
ATTGCTCGTGCGCTTGTTATGGAACCAGACTTTGTGATTGCCGATGAGCCAATTTCAGCACTTGACGTGTCTGTTCGTGC
TCAAGTTTTAAATCTTCTTAAGAAATTCCAAAAAGATCTGGGCTTGACCTATCTTTTCATTGCTCATGACCTTTCTGTAG
TGCGTTTTATCTCAGATCGGATTGCTGTTATTTATAAGGGAGTGATTGTTGAAGTTGCTGAAACAGAAGAACTCTTCAAT
AATCCAATCCATCCTTATACTCAGTCTTTATTGTCAGCTGTCCCAATTCCGGATCCGATTTTGGAACGGAAGAAAGTATT
GAAAGTCTACGATGCTGATCAACATGATTATTCAGTAGATAAGCCAGAAATGGTTGAAATTCGTCCAGGGCACTTTGTCT
GGGCTAATAAAGCAGAAGTTGAAAAGTATAATAAGGAATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.601

99.674

0.863
  amiF Streptococcus salivarius strain HSISS4

86.601

99.674

0.863
  amiF Streptococcus thermophilus LMD-9

86.275

99.674

0.86