Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R1C93_RS25250 Genome accession   NZ_CP136754
Coordinates   4868619..4870139 (+) Length   506 a.a.
NCBI ID   WP_329600889.1    Uniprot ID   -
Organism   Citrobacter koseri strain K820     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4863619..4875139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1C93_RS25230 (R1C93_25230) ilvE 4865176..4866105 (-) 930 WP_012131120.1 branched-chain-amino-acid transaminase -
  R1C93_RS25235 (R1C93_25235) ilvM 4866123..4866386 (-) 264 WP_012131119.1 acetolactate synthase 2 small subunit -
  R1C93_RS25240 (R1C93_25240) ilvG 4866383..4868029 (-) 1647 WP_115626141.1 acetolactate synthase 2 catalytic subunit -
  R1C93_RS25600 ilvX 4868032..4868082 (-) 51 WP_202401504.1 peptide IlvX -
  R1C93_RS25245 (R1C93_25245) ilvL 4868169..4868267 (-) 99 WP_001311244.1 ilv operon leader peptide -
  R1C93_RS25250 (R1C93_25250) comM 4868619..4870139 (+) 1521 WP_329600889.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R1C93_RS25255 (R1C93_25255) maoP 4870166..4870504 (-) 339 WP_012131115.1 macrodomain Ori organization protein MaoP -
  R1C93_RS25260 (R1C93_25260) hdfR 4870611..4871456 (+) 846 WP_012131114.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55041.16 Da        Isoelectric Point: 7.8738

>NTDB_id=892617 R1C93_RS25250 WP_329600889.1 4868619..4870139(+) (comM) [Citrobacter koseri strain K820]
MSLSIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTTNKLNEYELVGELALTGALRGVPGAISSATEAIRAGRHIIVAKENKAEVGLISGEGCLIADHL
QTVCAFLEGKRDLEKPVSTDSDACLLHDDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPSLSDK
EALESAAILSLVNADTVQRQWKRRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCSPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQAAVKG
EDSATVKVRVISARKRQYERQGKLNAHLDSQGIRKYCSLHSDDAHWLEETLIHLGLSIRAWQRLLKVARTIADLEQTENI
TRLHLQEAVGYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=892617 R1C93_RS25250 WP_329600889.1 4868619..4870139(+) (comM) [Citrobacter koseri strain K820]
ATGTCACTGTCGATTGTTCACACACGCGCCGCACTTGGCGTTAATGCGCCGCCAATAACCATCGAGGTGCATATCAGTAA
TGGCCTGCCGGGTTTAACAATGGTTGGGCTACCTGAAACGACGGTAAAGGAGGCCCGGGATCGGGTTCGCAGCGCAATCA
TCAATAGCGGGTATGAATTTCCGGCGAAGAAAATCACCATTAATCTGGCCCCGGCAGATTTACCCAAAGAGGGCGGAAGA
TATGATTTACCTATCGCAATTGCGCTTCTGGCAGCGTCAGAGCAACTTACAACAAATAAGCTTAATGAATATGAACTGGT
GGGCGAACTGGCCCTTACAGGTGCGTTACGTGGCGTTCCAGGCGCGATATCCAGTGCAACCGAGGCAATTCGGGCAGGCA
GACATATCATTGTTGCAAAAGAGAATAAGGCGGAAGTTGGGCTAATCAGCGGGGAGGGATGCCTGATTGCAGATCATCTG
CAAACGGTATGCGCATTTCTGGAAGGGAAACGTGATCTTGAGAAACCAGTCTCTACCGATTCTGACGCCTGTTTACTGCA
TGACGATCTCAGTGATGTTATCGGTCAGGAACAGGGGAAACGAGGCCTGGAAATCACGGCCGCAGGAGGGCACAACCTGC
TGCTGATAGGCCCGCCAGGTACGGGAAAAACCATGCTGGCCAGCCGCATTAATGGGCTACTGCCATCATTAAGCGACAAA
GAAGCGCTGGAAAGTGCGGCGATTCTCAGCCTGGTGAACGCCGATACGGTACAAAGGCAGTGGAAACGGCGTCCTTTCCG
CTCGCCTCATCACAGCGCGTCATTAACGGCAATGGTAGGGGGAGGTTCAATACCCGCGCCAGGAGAAATATCGCTGGCGC
ACAACGGTATTCTGTTTCTGGATGAACTGCCTGAGTTTGAGCGACGCACGCTGGATGCGCTGCGTGAACCTATTGAGTCT
GGTCAGATACACCTTTCGCGCACCCGGGCAAAGATCACTTATCCTGCGCGCTTCCAACTGATTGCAGCGATGAATCCCAG
CCCGACCGGTCACTATCAGGGGAACCATAATCGCTGTAGCCCGGAACAGACGTTGCGCTACCTCAGCCGTTTATCCGGCC
CCTTTCTCGATCGATTCGATCTCTCGCTCGAAATTCCCCTGCCACCGCCCGGTATACTCAGCCAGGCAGCGGTGAAAGGC
GAGGACAGCGCTACAGTGAAAGTACGGGTGATATCCGCACGGAAACGCCAGTACGAACGACAGGGGAAGCTAAACGCCCA
TCTGGACAGCCAGGGTATACGAAAGTACTGCTCTCTACACAGTGATGATGCGCACTGGCTGGAGGAGACGCTGATACATC
TGGGATTGTCTATACGAGCCTGGCAGCGCTTACTGAAGGTTGCCCGTACCATTGCCGATCTGGAACAAACGGAGAATATT
ACGCGCCTGCATTTGCAGGAGGCTGTGGGCTATCGGGCAATAGACAGACTACTGATTCATTTACAAAAACTACTGACGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.363

99.209

0.589
  comM Haemophilus influenzae Rd KW20

58.203

100

0.589
  comM Glaesserella parasuis strain SC1401

58.546

100

0.589
  comM Vibrio campbellii strain DS40M4

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

47.4

98.814

0.468
  comM Legionella pneumophila strain ERS1305867

47.4

98.814

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.936

99.407

0.437