Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R1C93_RS23825 Genome accession   NZ_CP136754
Coordinates   4557131..4557667 (-) Length   178 a.a.
NCBI ID   WP_200097137.1    Uniprot ID   -
Organism   Citrobacter koseri strain K820     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4552131..4562667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1C93_RS23810 (R1C93_23810) fecE 4552389..4553156 (+) 768 WP_012134609.1 Fe(3+) dicitrate ABC transporter ATP-binding protein FecE -
  R1C93_RS23815 (R1C93_23815) - 4553621..4556329 (+) 2709 WP_329601230.1 cation-transporting P-type ATPase -
  R1C93_RS23820 (R1C93_23820) - 4556438..4556869 (-) 432 WP_012134612.1 universal stress protein -
  R1C93_RS23825 (R1C93_23825) ssb 4557131..4557667 (-) 537 WP_200097137.1 single-stranded DNA-binding protein SSB1 Machinery gene
  R1C93_RS23830 (R1C93_23830) uvrA 4557917..4560739 (+) 2823 WP_110494802.1 excinuclease ABC subunit UvrA -
  R1C93_RS23835 (R1C93_23835) - 4560835..4561191 (-) 357 WP_012134615.1 MmcQ/YjbR family DNA-binding protein -
  R1C93_RS23840 (R1C93_23840) aphA 4561394..4562107 (-) 714 WP_012134616.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19091.09 Da        Isoelectric Point: 5.2157

>NTDB_id=892614 R1C93_RS23825 WP_200097137.1 4557131..4557667(-) (ssb) [Citrobacter koseri strain K820]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLHKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQS
APAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=892614 R1C93_RS23825 WP_200097137.1 4557131..4557667(-) (ssb) [Citrobacter koseri strain K820]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAGCAGACCGGTGAGATGAAAGAGCAGACGG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCAGCGAATATCTGCATAAAGGTTCTCAGGTTTACATT
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAGTCCGGTCAGGACAAATACACCACTGAAGTGGTGGTCAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGCGGCGGCGCTCCGGCTGGCGGCAATATGGGCGGCGGTCAGCAGCAGG
GTGGTTGGGGTCAGCCTCAGCAACCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAACAATCC
GCTCCGGCACCGTCTAACGAACCGCCAATGGATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.758
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.59
  ssb Neisseria meningitidis MC58

46.111

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.111

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.371