Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R1T46_RS00430 Genome accession   NZ_CP136693
Coordinates   91117..92640 (-) Length   507 a.a.
NCBI ID   WP_317307026.1    Uniprot ID   -
Organism   Marinobacter salarius strain CI.11.F.A3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 86117..97640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T46_RS00400 (R1T46_00400) metW 86943..87545 (+) 603 WP_036203131.1 methionine biosynthesis protein MetW -
  R1T46_RS00405 (R1T46_00405) - 87542..87997 (+) 456 WP_036203129.1 DUF4426 domain-containing protein -
  R1T46_RS00410 (R1T46_00410) rdgB 87997..88608 (+) 612 WP_036203126.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  R1T46_RS00415 (R1T46_00415) hemW 88611..89765 (+) 1155 WP_036203123.1 radical SAM family heme chaperone HemW -
  R1T46_RS00420 (R1T46_00420) - 89765..90298 (+) 534 WP_036203120.1 hypothetical protein -
  R1T46_RS00425 (R1T46_00425) trmB 90324..91040 (-) 717 WP_007154277.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  R1T46_RS00430 (R1T46_00430) comM 91117..92640 (-) 1524 WP_317307026.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R1T46_RS00435 (R1T46_00435) - 92700..92954 (-) 255 WP_036203113.1 accessory factor UbiK family protein -
  R1T46_RS00440 (R1T46_00440) glnK 93373..93711 (+) 339 WP_004578958.1 P-II family nitrogen regulator -
  R1T46_RS00445 (R1T46_00445) - 93784..95064 (+) 1281 WP_317307027.1 ammonium transporter -
  R1T46_RS00450 (R1T46_00450) - 95214..95357 (-) 144 WP_221886060.1 DUF6316 family protein -
  R1T46_RS00455 (R1T46_00455) - 95524..96120 (-) 597 WP_075195020.1 DUF2931 family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 53787.70 Da        Isoelectric Point: 7.2062

>NTDB_id=892483 R1T46_RS00430 WP_317307026.1 91117..92640(-) (comM) [Marinobacter salarius strain CI.11.F.A3]
MFAVVHTRASIGVSAPSVTVEVHLSGGLPALSIVGLPETGVRESRERVRSALMNAGFEFPARRITINLAPADLPKEGGRF
DLPIALGILAASGQIPAESLAQYECVGELSLDGALRPLKGVLPAILAARNEGRRLLIPQANAAEAALASQDDVLPAGHLL
TVCEHLCDRARISPVAPAVPETGVNAGPDLADVHGQSVPRRALEIAAAGGHNLLMFGPPGTGKSMLASRLPGILPPLTTE
SALEVASIHSVAGHPVRDGEWCRPPYRAPHHTASSVAMVGGGSSPRPGEISLAHRGVLFLDELPEFERRVLEVLREPMES
GEIAISRAARQVTFPACFQVVAAMNPCPCGYLGHPTIECQCTPPQVLRYRAKISGPLLDRFDLHVEVPVQSGEVLMKRDG
GGESSTVVRDRVYQARERQMQRGSGNAALSGGELQTHCRVDAAGEAMLSAAMERLGLSARALHRILRVARTLADLDGLDH
IGNGHLVEALGYRKLDRQQTRNAQVSV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=892483 R1T46_RS00430 WP_317307026.1 91117..92640(-) (comM) [Marinobacter salarius strain CI.11.F.A3]
ATGTTTGCCGTTGTCCATACCCGCGCCAGTATTGGCGTTTCAGCACCCTCCGTTACCGTTGAAGTCCACCTGTCAGGCGG
CCTGCCGGCGCTGTCCATCGTCGGGCTCCCCGAAACGGGGGTTCGTGAAAGCCGGGAGCGTGTTCGCAGTGCGCTGATGA
ACGCCGGCTTTGAATTCCCCGCCCGCCGAATCACCATCAATCTGGCTCCTGCGGACCTGCCCAAGGAGGGCGGCCGCTTC
GATCTCCCCATTGCCCTGGGCATTCTTGCCGCTTCCGGACAGATTCCGGCGGAAAGCCTCGCACAGTATGAATGCGTGGG
AGAGCTTTCCCTGGATGGTGCGCTGAGACCGTTGAAAGGTGTGCTCCCGGCGATACTGGCAGCCCGCAACGAGGGGCGTC
GGTTGCTGATCCCCCAGGCCAATGCCGCGGAAGCCGCACTGGCCAGTCAGGACGATGTGTTGCCAGCCGGCCATTTACTG
ACGGTCTGCGAACACCTGTGTGATCGGGCAAGGATTTCCCCAGTAGCGCCAGCGGTGCCGGAAACGGGCGTGAACGCCGG
TCCGGACCTTGCGGACGTGCATGGTCAGAGCGTGCCGCGGCGGGCGTTGGAAATCGCCGCCGCCGGCGGGCATAACCTGC
TGATGTTTGGTCCACCGGGCACTGGTAAAAGCATGCTCGCCAGCCGTCTGCCGGGTATTTTGCCACCGCTAACCACCGAA
TCTGCGCTTGAGGTAGCAAGCATCCACTCCGTGGCCGGTCATCCCGTACGGGACGGAGAGTGGTGCCGGCCGCCCTACCG
CGCGCCCCATCATACTGCCTCGTCGGTTGCCATGGTGGGTGGCGGTAGCAGTCCGCGCCCCGGAGAAATCTCCCTGGCGC
ACCGCGGTGTGTTGTTTCTCGACGAACTGCCAGAGTTCGAGCGCCGGGTGCTGGAAGTGCTGCGGGAACCCATGGAGTCC
GGCGAGATTGCCATCAGTCGAGCAGCAAGGCAGGTGACTTTTCCAGCCTGTTTCCAGGTCGTGGCGGCCATGAACCCGTG
CCCGTGTGGCTATCTGGGGCATCCGACGATTGAGTGCCAGTGTACGCCCCCGCAGGTGCTCCGTTATCGGGCAAAGATAT
CAGGGCCACTGCTGGACCGGTTCGATTTGCATGTGGAAGTGCCGGTTCAGAGCGGGGAAGTGCTGATGAAGCGTGACGGT
GGGGGTGAGTCCAGCACGGTTGTGCGGGATCGGGTGTATCAGGCCCGCGAGCGGCAAATGCAGCGAGGATCCGGAAACGC
CGCGTTAAGTGGCGGTGAGCTGCAGACGCACTGCCGCGTGGATGCAGCAGGTGAGGCCATGTTATCCGCCGCCATGGAGC
GGCTGGGGCTCTCTGCCAGGGCATTGCATCGCATCCTGCGGGTGGCACGGACCCTGGCGGACCTGGACGGCCTCGACCAC
ATTGGCAATGGCCATCTGGTTGAGGCGTTGGGTTACCGCAAGCTGGACCGGCAGCAGACCCGGAATGCGCAGGTTTCGGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(20-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.728

98.028

0.536
  comM Glaesserella parasuis strain SC1401

53.386

99.014

0.529
  comM Haemophilus influenzae Rd KW20

53.293

98.817

0.527
  comM Vibrio campbellii strain DS40M4

53.521

98.028

0.525
  comM Legionella pneumophila str. Paris

49.899

97.633

0.487
  comM Legionella pneumophila strain ERS1305867

49.899

97.633

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.255

100

0.475