Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCV04_RS14590 Genome accession   NZ_AP024893
Coordinates   3154003..3155529 (-) Length   508 a.a.
NCBI ID   WP_171138795.1    Uniprot ID   -
Organism   Vibrio plantisponsor strain CECT 7581     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3149003..3160529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV04_RS14560 - 3149028..3149195 (+) 168 WP_102955528.1 hypothetical protein -
  OCV04_RS14565 - 3149312..3149581 (+) 270 WP_102942817.1 YihD family protein -
  OCV04_RS14570 ccoG 3149847..3151271 (+) 1425 WP_171138792.1 cytochrome c oxidase accessory protein CcoG -
  OCV04_RS14575 - 3151323..3152309 (+) 987 WP_171138793.1 serine/threonine protein kinase -
  OCV04_RS14580 - 3152344..3152946 (+) 603 WP_102942814.1 thiol:disulfide interchange protein DsbA/DsbL -
  OCV04_RS14585 - 3152984..3153862 (-) 879 WP_171138794.1 acyltransferase -
  OCV04_RS14590 comM 3154003..3155529 (-) 1527 WP_171138795.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCV04_RS14595 ilvG 3156030..3157676 (+) 1647 WP_171138796.1 acetolactate synthase 2 catalytic subunit -
  OCV04_RS14600 ilvM 3157689..3157973 (+) 285 WP_102942811.1 acetolactate synthase 2 small subunit -
  OCV04_RS14605 ilvD 3158030..3159871 (+) 1842 WP_171138797.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55263.65 Da        Isoelectric Point: 8.0474

>NTDB_id=89235 OCV04_RS14590 WP_171138795.1 3154003..3155529(-) (comM) [Vibrio plantisponsor strain CECT 7581]
MGLAIIHSRASVGVEAPSVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSSIINSQFVFPAKKITVNLAPADLPKEGGR
FDLPIALGILAASNQIAQTCLDKHEFIGELALSGELRSVKGVLPAALAASKSKRCLVVPHWNGDQAALVDSQQHKSAQTL
LEVCADLCGQKTLSLFESPNIVKSFGHSRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPPMTD
VEAMETASVASLTQQEINIHNWKQRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYHEGEQARVNPQVILRYLSRLSGPLLDRFDMSIEIPALPKGTLSNGGDR
GELTAIVKERVLQAREIMLERSGKVNALLQSREIEQVCPLTKLDAEFLENALHRLGLSVRAYHRIIKVARTIADLQGEME
INRAHLAEALGYRAMDRLLKQLTSQSIS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=89235 OCV04_RS14590 WP_171138795.1 3154003..3155529(-) (comM) [Vibrio plantisponsor strain CECT 7581]
ATGGGACTTGCGATTATCCATAGTCGAGCCAGTGTGGGTGTGGAAGCACCTTCAGTTACAGTGGAAGTTCATATCAGCAA
CGGTATGCCGGGATTCACCTTGGTTGGTTTGCCTGAAACCACGGTTAAGGAATCAAGAGATCGGGTTCGCAGTTCCATTA
TCAATTCTCAATTTGTTTTTCCGGCTAAGAAAATTACCGTCAATTTGGCGCCCGCAGATCTTCCCAAAGAAGGTGGACGT
TTTGATTTACCTATTGCGTTGGGCATTTTGGCGGCTTCGAACCAAATAGCACAAACATGCTTAGATAAGCATGAATTCAT
CGGAGAACTGGCGCTATCTGGCGAGCTTCGAAGTGTGAAAGGCGTACTTCCGGCTGCATTGGCTGCATCCAAAAGCAAAC
GTTGTTTGGTGGTTCCTCACTGGAACGGCGACCAAGCAGCTTTAGTCGATAGTCAGCAGCATAAATCGGCTCAAACTCTA
CTGGAAGTGTGTGCCGATTTGTGTGGACAGAAAACATTGAGCCTGTTTGAAAGTCCTAACATCGTCAAAAGCTTTGGTCA
CTCACGGGATCTACAAGATATCATCGGACAGCAACAGGGCAAACGAGCTTTAGAGATTGCAGCGGCGGGTAACCATAATC
TGCTGTTTTTGGGGCCACCCGGAACAGGTAAAACTATGCTGGCTTCGCGCTTGTGTGACCTACTGCCGCCAATGACTGAC
GTTGAGGCGATGGAAACCGCCTCTGTCGCTTCTCTTACTCAGCAAGAGATCAATATTCACAACTGGAAACAAAGACCGTT
TCGTTCGCCTCATCATTCGAGCTCGATGGCGGCGTTAGTGGGCGGAGGTTCTATTCCTCGCCCGGGAGAAATTTCTCTTG
CCCATAATGGGTTGTTATTTTTGGATGAGATGCCGGAGTTTGAACGAAAAGTCTTAGACTCACTTCGTGAACCTCTAGAG
TCTGGCGAAATCATTATTTCCCGAGCGCAAGGCAAAACTCGCTTTCCGGCTCGTTTTCAGTTGGTGGGAGCATTGAACCC
AAGCCCTACGGGGTATCACGAAGGAGAGCAGGCGAGAGTTAATCCACAGGTGATTTTGCGTTATTTGAGTCGCCTGTCTG
GCCCATTACTCGACAGGTTTGATATGTCGATAGAGATCCCCGCATTACCGAAAGGCACGCTGTCTAATGGTGGAGACAGG
GGAGAGCTAACGGCGATTGTCAAAGAGCGAGTGCTGCAAGCTCGTGAAATAATGTTAGAGCGAAGCGGAAAAGTGAATGC
CTTACTGCAAAGCCGAGAGATAGAGCAAGTTTGCCCTTTAACTAAGCTGGACGCTGAGTTTCTAGAAAATGCACTGCACC
GTTTGGGGTTATCCGTTCGGGCGTATCATCGCATCATCAAAGTCGCGCGTACGATTGCTGATCTACAGGGCGAGATGGAG
ATAAATCGTGCTCATCTTGCGGAAGCATTGGGTTACCGTGCGATGGACAGGTTGCTCAAACAACTTACTTCTCAGTCGAT
TAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

85.799

99.803

0.856
  comM Vibrio campbellii strain DS40M4

84.418

99.803

0.843
  comM Haemophilus influenzae Rd KW20

67.843

100

0.681
  comM Glaesserella parasuis strain SC1401

65.686

100

0.659
  comM Legionella pneumophila str. Paris

50.101

97.835

0.49
  comM Legionella pneumophila strain ERS1305867

50.101

97.835

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.902

100

0.451

Multiple sequence alignment