Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCV04_RS01685 Genome accession   NZ_AP024893
Coordinates   357228..357752 (+) Length   174 a.a.
NCBI ID   WP_102942762.1    Uniprot ID   -
Organism   Vibrio plantisponsor strain CECT 7581     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 352228..362752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV04_RS01670 uvrA 352295..355117 (-) 2823 WP_102942765.1 excinuclease ABC subunit UvrA -
  OCV04_RS01675 galU 355273..356142 (-) 870 WP_171137225.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV04_RS01680 qstR 356289..356936 (-) 648 WP_171137226.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV04_RS01685 ssb 357228..357752 (+) 525 WP_102942762.1 single-stranded DNA-binding protein Machinery gene
  OCV04_RS01690 csrD 357889..359880 (+) 1992 WP_171137227.1 RNase E specificity factor CsrD -
  OCV04_RS01695 - 359887..361335 (+) 1449 WP_171137228.1 MSHA biogenesis protein MshI -
  OCV04_RS01700 gspM 361332..361973 (+) 642 WP_171137229.1 type II secretion system protein GspM -
  OCV04_RS01705 - 361981..362310 (+) 330 WP_052404631.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19151.15 Da        Isoelectric Point: 5.2358

>NTDB_id=89200 OCV04_RS01685 WP_102942762.1 357228..357752(+) (ssb) [Vibrio plantisponsor strain CECT 7581]
MASRGVNKVILVGNLGGDPEVRYMPSGGAVANITIATSETWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRQQQAGGAGQGQPQQQGGWGQPQQPARQSQPAYQPAAQQAPQPQ
YNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=89200 OCV04_RS01685 WP_102942762.1 357228..357752(+) (ssb) [Vibrio plantisponsor strain CECT 7581]
ATGGCAAGCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACTTGGGTGGAGATCCTGAAGTTCGCTATATGCCAAGTGG
CGGTGCTGTTGCGAACATCACCATTGCAACGTCAGAAACATGGCGTGATAAAGCAACGGGCGAACAGCGTGAGAAAACTG
AGTGGCACCGAGTTGCTCTGTATGGAAAACTTGCAGAAGTAGCGGGTGAGTACCTGCGTAAGGGTTCTCAAGTTTACATT
GAGGGTCAACTGCAGACTCGTAAGTGGCAAGACCAAAGTGGTCAAGATCGTTACTCAACAGAAGTTGTTGTGCAAGGTTA
TAACGGCATCATGCAAATGCTTGGTGGTCGTCAACAACAAGCTGGTGGCGCGGGTCAAGGTCAACCACAGCAGCAAGGTG
GGTGGGGACAACCTCAACAACCTGCGAGACAGAGCCAACCTGCATATCAGCCAGCTGCTCAACAAGCTCCTCAGCCTCAA
TACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

87.006

100

0.885
  ssb Glaesserella parasuis strain SC1401

52.85

100

0.586
  ssb Neisseria meningitidis MC58

48.315

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.489

Multiple sequence alignment