Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCV04_RS01680 Genome accession   NZ_AP024893
Coordinates   356289..356936 (-) Length   215 a.a.
NCBI ID   WP_171137226.1    Uniprot ID   -
Organism   Vibrio plantisponsor strain CECT 7581     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 351289..361936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV04_RS01670 uvrA 352295..355117 (-) 2823 WP_102942765.1 excinuclease ABC subunit UvrA -
  OCV04_RS01675 galU 355273..356142 (-) 870 WP_171137225.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV04_RS01680 qstR 356289..356936 (-) 648 WP_171137226.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV04_RS01685 ssb 357228..357752 (+) 525 WP_102942762.1 single-stranded DNA-binding protein Machinery gene
  OCV04_RS01690 csrD 357889..359880 (+) 1992 WP_171137227.1 RNase E specificity factor CsrD -
  OCV04_RS01695 - 359887..361335 (+) 1449 WP_171137228.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25097.88 Da        Isoelectric Point: 7.3323

>NTDB_id=89199 OCV04_RS01680 WP_171137226.1 356289..356936(-) (qstR) [Vibrio plantisponsor strain CECT 7581]
MSKHNYARTIYFLCMDDTCVPEELEKALELLALPIPQILPEQLLRNYHTDKHKILLINYQEHHLIRQNLKALKITSPHFE
TILFNVDKRLHTEELLTFGNLKGLFYQDDTPESICEGLGEIINGQNWLPRHASSQLLHYYRYHFQAHHAQASVDLTAREI
QILRCLQTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRVQAISWANQNLLS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=89199 OCV04_RS01680 WP_171137226.1 356289..356936(-) (qstR) [Vibrio plantisponsor strain CECT 7581]
ATGTCAAAACACAACTATGCCAGAACCATATATTTTCTTTGCATGGACGATACATGCGTCCCTGAAGAATTGGAAAAAGC
GCTAGAACTTCTTGCTTTGCCAATCCCTCAAATACTCCCCGAACAGTTACTGCGAAATTATCACACAGATAAACACAAAA
TTTTGCTGATTAACTATCAGGAACATCATCTTATTCGACAAAATTTAAAAGCGTTAAAAATTACAAGCCCTCACTTTGAA
ACGATTCTGTTTAACGTTGATAAGAGGCTGCATACAGAGGAATTACTTACCTTCGGTAACTTAAAAGGACTCTTTTATCA
GGATGATACCCCCGAGAGTATCTGCGAAGGCTTGGGCGAAATAATTAACGGGCAAAACTGGCTTCCACGTCATGCATCAA
GCCAGCTTCTACATTATTACCGATATCATTTTCAGGCCCACCACGCACAAGCTTCGGTTGACCTCACGGCGAGAGAAATT
CAGATTTTGCGTTGCTTACAGACGGGGGCATCAAATATGCAGATGGCAGAAAGTCTTTTTATCAGCGAGTTTACAGTCAA
GTCTCATTTGTATCAGATATTTAAAAAGCTATCGGTGAAAAACAGAGTTCAAGCGATCAGTTGGGCAAATCAAAATCTGC
TTTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

71.028

99.535

0.707
  qstR Vibrio parahaemolyticus RIMD 2210633

56.221

100

0.567
  qstR Vibrio campbellii strain DS40M4

56.221

100

0.567

Multiple sequence alignment