Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RY846_RS23915 Genome accession   NZ_CP136601
Coordinates   4977199..4978719 (+) Length   506 a.a.
NCBI ID   WP_234103797.1    Uniprot ID   -
Organism   Citrobacter portucalensis strain L2724hy     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4972199..4983719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RY846_RS23895 (RY846_23895) - 4973755..4974684 (-) 930 WP_003829030.1 branched-chain amino acid transaminase -
  RY846_RS23900 (RY846_23900) ilvM 4974702..4974965 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  RY846_RS23905 (RY846_23905) ilvG 4974962..4976608 (-) 1647 WP_125363354.1 acetolactate synthase 2 catalytic subunit -
  RY846_RS23910 (RY846_23910) ilvL 4976748..4976846 (-) 99 WP_001311244.1 ilv operon leader peptide -
  RY846_RS23915 (RY846_23915) comM 4977199..4978719 (+) 1521 WP_234103797.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RY846_RS23920 (RY846_23920) maoP 4978744..4979082 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  RY846_RS23925 (RY846_23925) hdfR 4979189..4980034 (+) 846 WP_008787063.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55064.03 Da        Isoelectric Point: 7.2664

>NTDB_id=891931 RY846_RS23915 WP_234103797.1 4977199..4978719(+) (comM) [Citrobacter portucalensis strain L2724hy]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTTHILDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QAVCAFLEGKHDLDRPSSADFTPCALADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSDTLQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSQVKG
EDSATVKQRVIAARERQYRRQNKLNAQLDSQDIHKYCPLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQSDHI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=891931 RY846_RS23915 WP_234103797.1 4977199..4978719(+) (comM) [Citrobacter portucalensis strain L2724hy]
ATGTCACTATCGATTGTTCACACACGCGCTGCGCTGGGCGTGAATGCGCCAGCCATTACCATCGAGGTACATATCAGCAA
TGGTTTGCCTGGTTTAACCATGGTGGGATTACCCGAAACAACGGTAAAAGAGGCTCGCGATCGAGTTCGCAGTGCGATTA
TTAATAGCGGTTATGAATTCCCGGCGAAGAAGATAACCATAAACCTCGCTCCAGCCGATCTCCCGAAAGAAGGGGGACGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCAGCGTCTGAGCAGCTTACAACCCATATCCTCGATACATATGAGCTGGT
AGGCGAATTAGCGCTTACAGGCGCGTTACGCGGCGTTCCCGGTGCGATATCAAGTGCAACTGAAGCTATTCGCGCAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCAGCTGAAGTGGGACTGATACACGGTGAAGGGTGCCTGATAGCCGATCATCTA
CAGGCCGTATGCGCATTTCTCGAAGGTAAGCATGATTTAGACAGACCATCATCGGCAGATTTTACCCCCTGCGCATTAGC
AGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCAGCTGGCGGTCATAACCTCT
TACTCATCGGGCCGCCGGGAACGGGTAAGACCATGCTGGCCAGTCGCCTGAGAGGATTGCTTCCGCCACTGAGCAATGAT
GAAGCACTGGAAAGCGCCGCGATTCTAAGTCTGGTCAATTCCGACACGCTACAAAAACAGTGGAAACAACGCCCTTTTCG
TTCGCCGCATCACAGTGCTTCATTAACTGCCATGGTCGGTGGCGGCTCTATTCCTGCGCCAGGCGAGATATCTCTGGCGC
ATAACGGCATACTGTTTCTGGATGAACTTCCCGAGTTTGAGCGGCGCACGCTGGATGCACTGCGAGAGCCCATTGAGTCC
GGGCAGATTCATTTATCCCGCACTCGGGCAAAAATAACTTACCCCGCGCGTTTTCAGCTTATTGCTGCCATGAATCCCAG
CCCAACAGGACATTATCAGGGGAACCATAACCGCTGTACCCCAGAGCAGACACTACGCTACCTCAATCGATTATCAGGCC
CATTTCTTGACCGCTTCGATCTCTCCCTCGAAATCCCCTTACCGCCGCCCGGCATACTCAGCCAGAGCCAGGTAAAAGGG
GAAGATAGCGCAACGGTGAAGCAACGCGTTATAGCAGCACGAGAGCGTCAGTATCGGCGGCAGAATAAGTTAAATGCGCA
ACTGGACAGTCAGGATATCCATAAATACTGTCCACTGCGTAGCGACGATGCGCAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTATCCATCCGCGCTTGGTTACGCCTGATAAAGGTCGCTCGAACGATCGCGGATATAGAACAATCTGACCATATC
TCTCGCCAGCACTTACAGGAGGCTGTTGGGTATCGGGCGATAGACAGATTACTCATTCATTTGCAGAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Glaesserella parasuis strain SC1401

57.874

100

0.581
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Haemophilus influenzae Rd KW20

57.451

100

0.579
  comM Legionella pneumophila str. Paris

47.082

98.221

0.462
  comM Legionella pneumophila strain ERS1305867

47.082

98.221

0.462
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

99.605

0.427