Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RI844_RS13050 Genome accession   NZ_CP136600
Coordinates   3237866..3239398 (+) Length   510 a.a.
NCBI ID   WP_348395109.1    Uniprot ID   -
Organism   Thalassotalea fonticola strain S1-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3232866..3244398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI844_RS13040 (RI844_13040) ilvD 3234346..3236205 (-) 1860 WP_348395107.1 dihydroxy-acid dehydratase -
  RI844_RS13045 (RI844_13045) - 3236252..3237178 (-) 927 WP_348395108.1 branched-chain amino acid transaminase -
  RI844_RS13050 (RI844_13050) comM 3237866..3239398 (+) 1533 WP_348395109.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RI844_RS13055 (RI844_13055) ilvY 3239416..3240300 (-) 885 WP_348395110.1 HTH-type transcriptional activator IlvY -
  RI844_RS13060 (RI844_13060) ilvC 3240448..3241932 (+) 1485 WP_348395111.1 ketol-acid reductoisomerase -
  RI844_RS13065 (RI844_13065) - 3242145..3243224 (+) 1080 WP_348395112.1 asparaginase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 56068.48 Da        Isoelectric Point: 7.2796

>NTDB_id=891901 RI844_RS13050 WP_348395109.1 3237866..3239398(+) (comM) [Thalassotalea fonticola strain S1-1]
MTLASIYTRARIGLESPLVSIEIHLSAGLPGFQIVGLAETSVKESKNRVRSAIINCGFEFPSKKIIVNLAPADLPKEGGH
FDLPIAVGILAASDQIPGNELDHYEFAGELALSGELRAIIGEIPIAIASRDSKRTLVLPEANAQLASRVEQATIIAMRHL
EQLFPHFARQQPLPLISYEAPESTNDDQHKSIKDIADVMGQPLAKRALELAAAGSHNLLFIGPPGTGKTMLASRLPGILP
PMTTSESLETAAIHSICTTAINNQHWLKRPFRAPHHTASSAALVGGGSQPVPGEISLAHNGVLFLDELPEYDRKVLDVLR
EPMESGEVTISRAMHKTTYPAKFQLVAAMNPSPTGFYLDKRSTPEQILRYLNKLSGPFLDRIDIQLEVSRLPKGMWNNSE
HNNETSSTIRSRVQNCREIQLARQGKANAYLTSPELKLHCYLNDADCEFLELAVEKLGLSTRAHHKLLKIARTIADLKAE
PKIKREHLIEALSYRAMDRLIQHLTESISC

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=891901 RI844_RS13050 WP_348395109.1 3237866..3239398(+) (comM) [Thalassotalea fonticola strain S1-1]
ATGACTCTCGCTTCTATATATACTCGCGCCCGAATTGGCCTTGAGTCTCCCCTTGTTTCAATTGAAATACATTTGAGTGC
CGGTTTACCAGGTTTTCAAATTGTTGGTTTAGCGGAAACATCAGTTAAAGAATCAAAAAACCGGGTGCGAAGTGCAATTA
TTAATTGCGGCTTTGAATTCCCTTCGAAAAAAATCATTGTTAATTTAGCACCCGCCGATTTACCCAAAGAAGGCGGGCAT
TTTGATTTACCCATTGCCGTAGGAATTCTTGCCGCCTCAGATCAAATTCCTGGCAATGAACTAGATCACTATGAATTTGC
CGGAGAGCTAGCGTTATCGGGAGAGCTCAGAGCAATTATCGGTGAAATACCGATCGCCATTGCCAGCAGAGATAGTAAGC
GTACATTAGTACTACCTGAAGCCAACGCACAACTTGCAAGCAGAGTCGAGCAAGCAACAATTATCGCCATGCGGCACCTG
GAACAATTGTTTCCACATTTTGCTCGTCAGCAACCATTGCCGTTAATAAGCTATGAAGCTCCTGAATCAACAAATGATGA
TCAGCATAAATCAATAAAAGATATCGCAGATGTAATGGGGCAGCCATTAGCAAAACGAGCGTTAGAACTAGCTGCTGCAG
GCAGCCATAATTTACTATTTATAGGCCCTCCAGGGACCGGTAAAACCATGTTAGCAAGTAGATTGCCCGGCATACTCCCA
CCGATGACCACCAGTGAATCTCTTGAAACTGCAGCCATTCATTCTATTTGTACTACCGCAATTAACAATCAACATTGGTT
GAAGCGCCCGTTTCGCGCTCCTCATCACACCGCCTCGTCAGCTGCGCTAGTTGGGGGTGGAAGCCAGCCTGTCCCCGGGG
AAATATCACTTGCTCACAATGGCGTATTGTTTCTTGACGAATTGCCCGAATATGACAGGAAAGTTTTGGATGTTTTACGT
GAGCCAATGGAGTCTGGTGAGGTAACGATATCAAGAGCCATGCATAAGACTACTTACCCAGCTAAATTCCAACTTGTTGC
AGCAATGAATCCAAGCCCTACCGGATTTTATTTAGATAAACGCAGCACGCCTGAGCAAATATTACGTTACTTAAATAAGT
TATCTGGCCCTTTTCTCGATCGTATTGATATTCAACTAGAAGTAAGTCGCTTACCGAAAGGCATGTGGAACAATAGCGAA
CACAATAATGAAACCAGCAGTACTATCAGAAGTAGAGTTCAAAACTGTCGCGAAATACAATTAGCCAGACAAGGAAAAGC
AAATGCCTATTTAACCAGCCCTGAACTCAAACTGCATTGCTACTTAAATGACGCTGATTGTGAGTTTTTAGAGCTCGCCG
TTGAAAAGCTAGGCCTGTCAACCAGAGCACATCACAAGTTATTAAAAATTGCCCGCACCATCGCTGATTTAAAAGCTGAA
CCGAAGATCAAACGTGAACACCTAATTGAAGCGTTGTCATATAGAGCAATGGACCGACTAATCCAGCACCTAACAGAGAG
TATCTCTTGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.805

99.412

0.565
  comM Haemophilus influenzae Rd KW20

56.607

99.412

0.563
  comM Vibrio campbellii strain DS40M4

56.016

99.412

0.557
  comM Glaesserella parasuis strain SC1401

54.635

99.412

0.543
  comM Legionella pneumophila str. Paris

48.2

98.039

0.473
  comM Legionella pneumophila strain ERS1305867

48.2

98.039

0.473
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.49

100

0.455