Detailed information NTG0891832

Bioinformatically predicted

Overview

• Name: comGF
• Type: Machinery gene
• Locus tag: AAEU35_RS08550
• Genome accession: NZ_CP152294
• Coordinates: 1709757..1710203 (+)
• Length: 148 a.a.
• NCBI ID: WP_029344525.1
• Uniprot ID: -
• Organism: Lactococcus lactis strain Q13
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1704757..1715203

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAEU35_RS08500	-	1705502..1705675 (+)	174	WP_096819001.1	hypothetical protein	-
AAEU35_RS08505	-	1705695..1706144 (+)	450	Protein_1628	hypothetical protein	-
AAEU35_RS08510	-	1706989..1707225 (+)	237	WP_317141346.1	hypothetical protein	-
AAEU35_RS08515	-	1707238..1707462 (+)	225	WP_010905920.1	hemolysin XhlA family protein	-
AAEU35_RS08520	-	1707476..1707763 (+)	288	WP_317141345.1	phage holin	-
AAEU35_RS08525	-	1707763..1708542 (+)	780	WP_317141344.1	peptidoglycan amidohydrolase family protein	-
AAEU35_RS08530	-	1708552..1708677 (+)	126	WP_317141343.1	hypothetical protein	-
AAEU35_RS08535	comGC	1708839..1709135 (+)	297	WP_167593410.1	competence type IV pilus major pilin ComGC	Machinery gene
AAEU35_RS08540	comGD	1709167..1709526 (+)	360	WP_023188582.1	competence type IV pilus minor pilin ComGD	Machinery gene
AAEU35_RS08545	comGE	1709498..1709794 (+)	297	WP_058223572.1	competence type IV pilus minor pilin ComGE	Machinery gene
AAEU35_RS08550	comGF	1709757..1710203 (+)	447	WP_029344525.1	competence type IV pilus minor pilin ComGF	Machinery gene
AAEU35_RS08555	comGG	1710242..1710526 (+)	285	WP_025017139.1	competence type IV pilus minor pilin ComGG	Machinery gene
AAEU35_RS08560	-	1710608..1711045 (+)	438	WP_003129992.1	zinc-dependent MarR family transcriptional regulator	-
AAEU35_RS08565	-	1711042..1711884 (+)	843	WP_015427160.1	metal ABC transporter substrate-binding protein	-
AAEU35_RS08570	-	1712061..1712798 (+)	738	WP_012898617.1	metal ABC transporter ATP-binding protein	-
AAEU35_RS08575	-	1712791..1713600 (+)	810	WP_014570791.1	metal ABC transporter permease	-
AAEU35_RS08580	-	1713638..1714504 (-)	867	WP_058204413.1	RluA family pseudouridine synthase	-
AAEU35_RS08585	-	1714708..1715085 (+)	378	WP_180259833.1	pyridoxamine 5'-phosphate oxidase family protein	-

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 17111.91 Da
• Isoelectric Point: 8.6780

>NTDB_id=891832 AAEU35_RS08550 WP_029344525.1 1709757..1710203(+) (comGF) [Lactococcus lactis strain Q13]
MERKLCDLNFKVKAFTLLECLVALLAISGSVLVISGLTKMLKEQVAISQSDSIKDWQIFCQQMRFELSGTKLDRVEQNFL
YVTKDKKLRFGFMSDDFRKTDDKGQGYQPMLYDIKAAKIQATKNLITIRIDFNQGGERTFIYQFPEDT

Nucleotide

• Length: 447 bp

>NTDB_id=891832 AAEU35_RS08550 WP_029344525.1 1709757..1710203(+) (comGF) [Lactococcus lactis strain Q13]
ATGGAAAGGAAATTATGCGACTTGAACTTCAAAGTTAAAGCATTTACCTTGTTGGAGTGTTTGGTGGCACTTCTTGCAAT
TTCTGGTTCAGTCCTTGTCATCTCAGGTTTAACAAAGATGTTGAAAGAACAAGTGGCGATTAGTCAAAGTGATAGCATAA
AAGATTGGCAAATTTTCTGTCAGCAAATGCGTTTTGAACTCTCAGGAACAAAATTAGATAGGGTAGAACAGAATTTTCTG
TATGTAACTAAAGATAAAAAACTAAGGTTTGGTTTTATGAGTGATGATTTCCGGAAGACTGATGACAAAGGTCAGGGTTA
TCAGCCAATGCTTTATGATATAAAAGCGGCTAAGATTCAAGCTACTAAAAATTTAATAACCATAAGAATTGATTTTAATC
AAGGAGGTGAAAGAACATTTATTTATCAATTTCCAGAAGATACGTAA

Domains

Predicted by InterProScan.

• Putative Competence protein ComGF (ComGF) (48-137)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF	Lactococcus lactis subsp. cremoris KW2	76.259	93.919	0.716
comGF	Streptococcus mutans UA140	48.227	95.27	0.459
comGF	Streptococcus mutans UA159	47.518	95.27	0.453
comGF/cglF	Streptococcus mitis SK321	43.066	92.568	0.399
comGF/cglF	Streptococcus pneumoniae Rx1	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae D39	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae R6	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae TIGR4	40.426	95.27	0.385
comGF/cglF	Streptococcus mitis NCTC 12261	41.606	92.568	0.385