Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   AAEU35_RS01240 Genome accession   NZ_CP152294
Coordinates   259708..260763 (+) Length   351 a.a.
NCBI ID   WP_342630376.1    Uniprot ID   -
Organism   Lactococcus lactis strain Q13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 254708..265763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEU35_RS01225 - 256067..257728 (+) 1662 WP_342630375.1 FAD-dependent oxidoreductase -
  AAEU35_RS01230 arsB 257744..258796 (+) 1053 WP_021723429.1 ACR3 family arsenite efflux transporter -
  AAEU35_RS01235 - 258805..259008 (+) 204 WP_023189252.1 hypothetical protein -
  AAEU35_RS01240 xerS 259708..260763 (+) 1056 WP_342630376.1 tyrosine recombinase XerS Machinery gene
  AAEU35_RS01245 - 260847..261134 (+) 288 WP_270244788.1 hypothetical protein -
  AAEU35_RS01250 xerS 261617..262687 (+) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  AAEU35_RS01255 trmFO 262732..264075 (-) 1344 WP_025017071.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40553.26 Da        Isoelectric Point: 9.3065

>NTDB_id=891779 AAEU35_RS01240 WP_342630376.1 259708..260763(+) (xerS) [Lactococcus lactis strain Q13]
MSENHGYRYNVNKLMLEFPYYVNEFIQSKDTVPLSIASIYSYCLEFRKYLKWMNASNITDHGNIKEITLKEIENVTKREL
EEFVLHERLRLEAKCGYNTHTSALNRTIAAIKSLYNYLCEQTEDEDGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLF
LGDETKAFLEFVEHEYEKSISNRAITSFKKNKKRDLAILSLFLSSGLRCAELVGINLTDLNLETGKVSVMRKEGKKDVVP
IAHFSHKHITDYFDARSSLNTDVDALFITDYNQTIRKISNASINKMVAKYSEAYKVRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALRKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=891779 AAEU35_RS01240 WP_342630376.1 259708..260763(+) (xerS) [Lactococcus lactis strain Q13]
ATGTCAGAAAATCATGGTTATCGTTATAATGTAAATAAACTCATGCTTGAGTTTCCCTACTATGTCAATGAGTTCATCCA
GTCTAAGGACACTGTACCACTGAGTATTGCCTCTATTTACTCTTACTGCCTGGAGTTTAGAAAATACTTGAAATGGATGA
ATGCTAGTAATATAACTGACCACGGTAACATCAAAGAGATTACACTAAAAGAAATTGAAAATGTAACAAAACGTGAACTA
GAAGAGTTTGTTCTTCATGAACGGTTACGATTAGAAGCAAAATGCGGTTATAATACACATACATCAGCATTAAATCGAAC
CATTGCAGCGATTAAGAGTTTATATAATTATCTTTGTGAACAAACTGAGGATGAAGACGGAAATACATACATGACACGAA
ATGTTAGTCGTTTAATTCATATCCGAAAAAAAAGCGAAACTCTGCATTATCGTGCAGCACAACTGGAAGGTAAACTATTC
TTAGGAGACGAAACTAAAGCATTTTTAGAGTTTGTTGAACATGAATATGAAAAGTCTATCAGTAATCGAGCGATAACAAG
TTTCAAAAAAAATAAAAAAAGAGATTTAGCCATACTAAGCCTCTTTTTATCTTCTGGATTACGCTGTGCGGAACTTGTAG
GAATCAATCTAACTGATTTAAACCTTGAAACTGGTAAAGTAAGTGTGATGCGAAAAGAAGGCAAGAAAGATGTAGTGCCT
ATTGCTCATTTTTCGCATAAGCATATAACAGATTATTTTGATGCAAGAAGTAGCTTAAATACTGATGTAGATGCCTTATT
TATCACGGATTATAACCAAACAATCAGAAAAATTTCTAATGCATCGATAAATAAAATGGTTGCAAAGTATTCAGAAGCTT
ATAAAGTGAGAGTAACCCCTCATACTCTAAGGCATACATTCGCCACAAGACTTTATAATGTCAGTCACTCTCAAGTCCTT
GTGAGCAACCAATTAGGGCATTCATCAACAAAACCAACTGAGTTATATACCCACATTGTCAGTGCTGAAGCTAAAGATGC
TTTAAGAAAGTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(186-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

46.286

99.715

0.462