Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RY930_RS00505 Genome accession   NZ_CP136589
Coordinates   112526..114040 (-) Length   504 a.a.
NCBI ID   WP_317114401.1    Uniprot ID   -
Organism   Aeromonas veronii strain BIM B-1812     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107526..119040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RY930_RS00480 (RY930_00480) - 108741..109376 (-) 636 WP_317114396.1 nicotinamidase -
  RY930_RS00485 (RY930_00485) - 109451..110101 (+) 651 WP_317114397.1 DNA mismatch repair protein MutT -
  RY930_RS00490 (RY930_00490) - 110098..110604 (+) 507 WP_317114398.1 DUF523 domain-containing protein -
  RY930_RS00495 (RY930_00495) - 110529..111494 (-) 966 WP_317114399.1 acyltransferase -
  RY930_RS00500 (RY930_00500) - 111501..112400 (-) 900 WP_317114400.1 acyltransferase -
  RY930_RS00505 (RY930_00505) comM 112526..114040 (-) 1515 WP_317114401.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RY930_RS00510 (RY930_00510) ilvG 114425..116071 (+) 1647 WP_317114402.1 acetolactate synthase 2 catalytic subunit -
  RY930_RS00515 (RY930_00515) ilvM 116068..116346 (+) 279 WP_139426456.1 acetolactate synthase 2 small subunit -
  RY930_RS00520 (RY930_00520) - 116359..117303 (+) 945 WP_317114403.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54650.51 Da        Isoelectric Point: 7.4493

>NTDB_id=891779 RY930_RS00505 WP_317114401.1 112526..114040(-) (comM) [Aeromonas veronii strain BIM B-1812]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPNKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQNAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLNEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSAQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPSI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=891779 RY930_RS00505 WP_317114401.1 112526..114040(-) (comM) [Aeromonas veronii strain BIM B-1812]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAACAAACACATCACCGTCAATCTGGCCCCCGCCGACCTGCCCAAGGAGGGGGGCCGC
TTCGATCTGGCCATCGCCATCGGTATTCTTGCCGCTTCCAAGCAGATACCTGCAAAATATCTGCTCGATCACGAATTCTT
AGGGGAATTGGCCCTGACCGGAGAGATCCGCCCTGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGGC
GCACCCTGCTGGTACCGCGAGAGAACGGCCCGGAAGCCTCTCTCATTCAGGATGCAGAGGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAGTACGAACTGCCGCTGCCGGATCCCCAAAACGCAGAGAGCCTGCCCGATGT
ACCGGATCTGCAGGATGTGATTGGTCAGTCTCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGTCTGCCCGGCATTCTGCCGCCGCTGAACGAGCAG
GAAGCGCAGCAGACTGCCGCCATCCACTCCATCGGTGGCCTCACACCGCGCGCTGGTCACTGGCACCACAGACCCTATCG
CACACCCCACCACAGTGCCTCGGCAGTGGCGCTGGTGGGAGGCGGCAGCCACCCGCGGCCCGGCGAAATTTCGCTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAATTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAATCCCAG
CCCCTGCGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTGCGCTACCTCGGCAAACTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGAGGG
GAGTCTAGTCAGCAGATCCGCGATCGGGTACTGGCGGCGCGAGAACGCATGCTGAGCCGTAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCAGCGCAAGATGCCGAATTTTTGGAGAATGCTATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCTCCATC
GGCAAGGAGCATCTTATTGAGGCGCTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGACTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

62.948

99.603

0.627
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

61.952

99.603

0.617
  comM Glaesserella parasuis strain SC1401

61.144

100

0.615
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464