Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RY972_RS00750 Genome accession   NZ_CP136584
Coordinates   153616..155130 (-) Length   504 a.a.
NCBI ID   WP_075111945.1    Uniprot ID   -
Organism   Aeromonas allosaccharophila strain BIM B-1809     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 148616..160130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RY972_RS00725 (RY972_00725) - 149830..150465 (-) 636 WP_005357452.1 nicotinamidase -
  RY972_RS00730 (RY972_00730) - 150540..151190 (+) 651 WP_005339607.1 DNA mismatch repair protein MutT -
  RY972_RS00735 (RY972_00735) - 151187..151693 (+) 507 WP_317103160.1 DUF523 domain-containing protein -
  RY972_RS00740 (RY972_00740) - 151618..152583 (-) 966 WP_317103161.1 acyltransferase -
  RY972_RS00745 (RY972_00745) - 152590..153489 (-) 900 WP_317103162.1 acyltransferase -
  RY972_RS00750 (RY972_00750) comM 153616..155130 (-) 1515 WP_075111945.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RY972_RS00755 (RY972_00755) ilvG 155515..157161 (+) 1647 WP_317103163.1 acetolactate synthase 2 catalytic subunit -
  RY972_RS00760 (RY972_00760) ilvM 157158..157436 (+) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  RY972_RS00765 (RY972_00765) - 157449..158393 (+) 945 WP_139734433.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54636.57 Da        Isoelectric Point: 7.6884

>NTDB_id=891732 RY972_RS00750 WP_075111945.1 153616..155130(-) (comM) [Aeromonas allosaccharophila strain BIM B-1809]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLNHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQTTDTLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=891732 RY972_RS00750 WP_075111945.1 153616..155130(-) (comM) [Aeromonas allosaccharophila strain BIM B-1809]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCTCCGCAAGTTACAGTGGAAGTTCATCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCACGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAACTTCGAGTTCCCGAGCAAACACATCACAGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGCGGTCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAAATACCGGCAAAATACCTGCTCAATCACGAATTTTT
AGGGGAGTTGGCTCTGACTGGCGAGATCCGTCCCGTGCTCGGCGTGCTGCCTGCCGTGCTCGCCTGCCGCGATGCAGGAC
GCACCCTGCTGGTGCCGCGAGAGAACGGCCCCGAGGCCTCGCTCATTCAGGATGCCGAGGTGCGTACCGCCCACCAGTTG
CTGGCCGTCACCGCCTGGCTGGCGGGTCAATACGAGCTGCCACTGCCGGAGCCCCAGACCACTGATACCCTGCCCGATGT
ACCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCAGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGTCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGTCTGCCCGGCATTCTGCCACCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCGCACCACAGCGCATCGGCGGTGGCGCTGGTAGGCGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGTTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAACCGCTGGAGACC
GGCCATATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGCGACGGCCAGACCCGTTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAACTTTCCGGTC
CCTTTCTCGACCGCTTCGATCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGTCTCACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGATCGGGTGCTGGCGGCGCGGGAGCGCATGCTGAGCCGCAATGGCAAGCTCAACAATCT
GCTGGATAGTCGTGAAATCGAAGATATTTGCCGATTATCGCCGCAAGATGCCGAGTTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTGTCGCGCACCATCGCCGATCTGGCGGGGCAACCGGCCATC
GGCAAGGAGCATCTGATCGAGGCTCTCGGTTATCGTGCCATGGATCGTCTGCTGTCGCGGCTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Haemophilus influenzae Rd KW20

61.462

100

0.617
  comM Glaesserella parasuis strain SC1401

60.158

100

0.605
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.365

100

0.468