Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RZO07_RS29935 Genome accession   NZ_CP136583
Coordinates   6604613..6606106 (+) Length   497 a.a.
NCBI ID   WP_317070604.1    Uniprot ID   -
Organism   Pseudomonas protegens strain msBK 4-2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6599613..6611106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZO07_RS29905 (RZO07_29905) - 6600158..6600862 (+) 705 WP_317070602.1 HAD family hydrolase -
  RZO07_RS29910 (RZO07_29910) sutA 6600987..6601310 (-) 324 WP_023967855.1 transcriptional regulator SutA -
  RZO07_RS29915 (RZO07_29915) - 6601413..6601838 (-) 426 WP_317070603.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RZO07_RS29920 (RZO07_29920) - 6602048..6603385 (-) 1338 WP_102881269.1 ammonium transporter -
  RZO07_RS29925 (RZO07_29925) glnK 6603419..6603757 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  RZO07_RS29930 (RZO07_29930) - 6604174..6604434 (+) 261 WP_072451854.1 accessory factor UbiK family protein -
  RZO07_RS29935 (RZO07_29935) comM 6604613..6606106 (+) 1494 WP_317070604.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RZO07_RS29940 (RZO07_29940) - 6606111..6607325 (-) 1215 WP_317070605.1 aldose 1-epimerase family protein -
  RZO07_RS29945 (RZO07_29945) - 6607439..6608017 (-) 579 WP_102881272.1 TetR/AcrR family transcriptional regulator -
  RZO07_RS29950 (RZO07_29950) - 6608131..6609057 (+) 927 WP_185021125.1 ABC transporter six-transmembrane domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53399.32 Da        Isoelectric Point: 8.4355

>NTDB_id=891728 RZO07_RS29935 WP_317070604.1 6604613..6606106(+) (comM) [Pseudomonas protegens strain msBK 4-2]
MSLAIIHSRAQVGVQAPAVSVEVHLANGLPSLTLVGLPEAAVKESKDRVRSAILNAGFSFPPRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALALDNLECLGELALSGEVRAVRGVLPAALAARKAGRTLLVPRANAEEACLASGLEVIAVDHL
LEAVAHLNGHVPIAPYISDGLQENHSPYPDLREVQGQLAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLQE
DEALEVAAIQSVSSHKPLRHWPQRPFRQPHHSASGPALVGGGSKPRPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GQIVIARARDRVQFPARFQLVAAMNPCPCGYLGDPNGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNPEPQP
GDDSASAAARVAQARERQQQRQGCANAHLDLPGLRRHCRLSTADERWLEAACERLNLSLRAAHRLLKVARTLADLEQAAR
INREHLAEALHYRPSTG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=891728 RZO07_RS29935 WP_317070604.1 6604613..6606106(+) (comM) [Pseudomonas protegens strain msBK 4-2]
ATGTCCCTGGCAATCATCCACAGCCGTGCCCAAGTGGGCGTACAGGCTCCGGCTGTCAGCGTTGAAGTGCACCTGGCCAA
CGGCCTGCCGAGCCTGACCCTGGTCGGGCTGCCGGAAGCGGCAGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCC
TCAACGCTGGATTCAGCTTCCCGCCTCGACGCATCACCCTCAACCTGGCTCCGGCGGATTTGCCCAAGGACGGTGGACGA
TTCGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCAGCGTGCAAGTGCCGGCCCTGGCGCTGGACAACCTCGAATGCCT
GGGTGAGCTGGCCTTGTCCGGCGAGGTGCGAGCGGTGCGCGGTGTGCTCCCGGCCGCGCTGGCGGCACGCAAGGCGGGAC
GCACCCTGCTGGTGCCCCGGGCCAATGCCGAGGAAGCCTGCCTCGCCTCGGGCCTGGAAGTGATCGCCGTAGACCATCTG
CTGGAGGCCGTCGCCCACCTCAACGGCCACGTCCCCATTGCGCCGTACATCAGCGACGGCTTGCAGGAGAATCACTCGCC
CTACCCCGACCTGCGGGAAGTCCAGGGCCAACTGGCCGCCAAGCGTGCCTTGCTGGTCGCTGCCGCCGGCGCCCACAACC
TGCTGTTCAGCGGCCCGCCCGGCACCGGCAAGACCTTGCTGGCCAGTCGCTTGCCCGGCCTGCTGCCACCCTTGCAGGAA
GACGAAGCCCTGGAAGTCGCAGCCATTCAATCGGTGAGCAGCCACAAGCCGCTGCGCCACTGGCCGCAGCGCCCCTTCCG
CCAGCCCCATCACTCGGCATCAGGCCCTGCGCTGGTGGGTGGCGGTTCGAAACCTCGTCCGGGAGAAATCACCCTGGCCC
ATCACGGTGTGTTGTTTCTCGATGAACTGCCGGAGTTCGACCGCAAGGTCCTGGAGGTTCTGCGCGAGCCCATGGAGTCG
GGCCAGATCGTCATCGCGCGCGCCCGCGACCGGGTGCAGTTCCCGGCGCGCTTCCAACTGGTAGCCGCCATGAACCCCTG
CCCCTGTGGCTACCTGGGCGACCCCAACGGACGGTGCCGCTGCACACCGGAACAGATCCAGCGCTATCGCAACAAGCTGT
CCGGCCCCTTGCTCGATCGCATCGACCTGCACCTGACCGTGGCCCGCGAAGCCACCGCCCTGAACCCCGAGCCGCAACCG
GGGGACGACAGTGCCAGCGCCGCCGCTCGGGTGGCGCAAGCTCGCGAGCGGCAACAGCAACGCCAGGGTTGCGCCAATGC
CCATCTCGACCTCCCCGGCCTAAGACGCCATTGCCGGCTATCCACGGCAGACGAACGCTGGCTGGAAGCGGCCTGCGAAC
GCCTGAACCTGTCGCTACGAGCCGCCCACCGCCTGCTGAAGGTGGCCCGGACCCTGGCCGACCTGGAGCAGGCGGCACGG
ATCAACCGCGAGCATCTGGCAGAAGCCCTGCATTACCGGCCGAGCACAGGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.162

99.598

0.559
  comM Haemophilus influenzae Rd KW20

55.4

100

0.557
  comM Vibrio cholerae strain A1552

55.556

99.598

0.553
  comM Glaesserella parasuis strain SC1401

55

100

0.553
  comM Legionella pneumophila str. Paris

50.201

100

0.503
  comM Legionella pneumophila strain ERS1305867

50.201

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.238

100

0.459