Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RZV17_RS18430 Genome accession   NZ_CP136580
Coordinates   4351079..4352599 (+) Length   506 a.a.
NCBI ID   WP_355605548.1    Uniprot ID   -
Organism   Xanthomonas cannabis strain DAR41331     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4346079..4357599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZV17_RS18410 (RZV17_18360) - 4346944..4347600 (+) 657 WP_355605542.1 RIO1 family regulatory kinase/ATPase -
  RZV17_RS18415 (RZV17_18365) - 4347819..4349792 (-) 1974 WP_355605545.1 beta-N-acetylglucosaminidase domain-containing protein -
  RZV17_RS18420 (RZV17_18370) - 4350251..4350625 (-) 375 WP_199680230.1 P-II family nitrogen regulator -
  RZV17_RS18425 (RZV17_18375) - 4350779..4351063 (+) 285 WP_039411142.1 accessory factor UbiK family protein -
  RZV17_RS18430 (RZV17_18380) comM 4351079..4352599 (+) 1521 WP_355605548.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RZV17_RS18435 (RZV17_18385) - 4352820..4353329 (+) 510 WP_039411161.1 lipocalin family protein -
  RZV17_RS18440 (RZV17_18390) - 4353913..4354089 (-) 177 WP_068835690.1 hypothetical protein -
  RZV17_RS18445 (RZV17_18395) - 4354472..4356043 (+) 1572 WP_184372059.1 EAL domain-containing protein -
  RZV17_RS18450 (RZV17_18400) - 4356442..4357563 (-) 1122 WP_047692770.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53815.70 Da        Isoelectric Point: 9.4177

>NTDB_id=891707 RZV17_RS18430 WP_355605548.1 4351079..4352599(+) (comM) [Xanthomonas cannabis strain DAR41331]
MSLALVHSRARVGVQAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALAEYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQQAPAAALAVATLGTAALPDMADVRGQPHARRALEIAAAGGHHLLLMGSPGCGKTLLASRLPGLLPDASD
AEALETAAIRSISGRGLDLARWRQRPYRSPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGN
PGEDSASVRARVVAARQRQLARGPLPNARLDQPDTDRHCRLHGDDQLLLERAIKHLQLSARSMHRILRVARTIADLDDSA
VIATRHLTEAIGYRKLDRALAPASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=891707 RZV17_RS18430 WP_355605548.1 4351079..4352599(+) (comM) [Xanthomonas cannabis strain DAR41331]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTAGGGGTGCAAGCGCCCGAGGTCCGGGTGGAAGTGCATCTCTCCGG
GGGTCTCCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCGGCGGTGCGCGAATCGCGCGAACGCGTGCGTGCGGCCCTGC
TGTGTGCCCAGTTTGAATTCCCGGCGCGGCGCATCACCATCAACCTGGCGCCAGCGGATCTGCCCAAGGACGGCGGTCGC
TTCGATCTGCCGATTGCGCTTGGCATCCTGGCTGCCAGCGGGCAGATCGACCGGCAGGCGCTGGCCGAGTACGAATTCCT
AGGCGAGCTGGCGCTGACCGGCGAGTTGCGCGGCGTCGACGGCGTGTTACCGGCGGCCCTGGCGGCCGCGCAGGCCGGGC
GGCGGCTGATCGTGCCGCTGGCCAATGGCGCCGAGGCCGCCATTGCCGGGCATGTCCAGGCCTTTACCGCACGTACCCTG
CTGGAGGTATGCGCCGCGCTCAACGGCACCCAGCAGGCACCAGCCGCCGCGCTGGCGGTGGCCACCCTGGGCACAGCGGC
CCTGCCCGACATGGCCGATGTGCGCGGCCAACCGCACGCACGCCGCGCACTGGAGATCGCCGCCGCGGGGGGCCACCACT
TGCTGCTGATGGGCAGCCCCGGATGCGGCAAGACGCTGCTCGCCTCGCGCCTGCCCGGCCTGCTGCCGGACGCCAGCGAT
GCCGAGGCGCTGGAAACCGCCGCCATCCGCTCCATCAGCGGGCGCGGGCTGGATCTGGCGCGCTGGCGGCAGCGGCCCTA
CCGATCCCCCCATCACACCGCCAGTGCGGTCGCCCTGGTCGGTGGTGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGG
CCCATAACGGCGTGTTGTTTCTGGACGAGCTGCCCGAGTGGCAACGACAGACGCTCGAGGTCCTGCGCGAGCCGCTGGAA
TCGGGGCTGGTCACGATCTCGCGGGCGGCGCGCAGCGTGGATTTCCCGGCACGGTTCCAGCTGGTTGCCGCCATGAACCC
GTGCCCGTGCGGCTGGGCCGGCGATGGCAGCGGGCGCTGTCGCTGCAGCAGCGACAGCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGACCGCATCGACCTGCATGTCGATGTACCGCGCCTGCCGCCGCAAGCGCTGCGCAGTGGCAAC
CCGGGCGAGGACAGCGCCAGCGTGCGTGCACGCGTGGTCGCCGCGCGGCAGCGCCAGCTTGCGCGCGGCCCGCTGCCCAA
CGCACGCCTCGACCAGCCGGACACCGATCGCCACTGCCGCCTGCACGGCGACGACCAATTGCTGCTGGAGCGCGCGATCA
AGCACCTGCAACTGTCCGCACGCTCGATGCACCGCATCCTGCGCGTGGCGCGCACCATCGCCGACCTGGACGACAGTGCC
GTCATCGCCACACGCCACCTGACCGAAGCCATCGGCTATCGCAAGCTCGATCGCGCGCTTGCCCCTGCCAGCGCGGCCTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.522

100

0.565
  comM Haemophilus influenzae Rd KW20

54.403

100

0.549
  comM Vibrio campbellii strain DS40M4

54.348

100

0.543
  comM Glaesserella parasuis strain SC1401

54.15

100

0.542
  comM Legionella pneumophila str. Paris

52.008

98.419

0.512
  comM Legionella pneumophila strain ERS1305867

52.008

98.419

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.276

100

0.455