Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RZV16_RS19555 Genome accession   NZ_CP136578
Coordinates   4595890..4597410 (+) Length   506 a.a.
NCBI ID   WP_228335034.1    Uniprot ID   -
Organism   Xanthomonas cannabis strain DAR82727     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4590890..4602410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZV16_RS19535 (RZV16_19480) - 4591754..4592410 (+) 657 WP_184557720.1 RIO1 family regulatory kinase/ATPase -
  RZV16_RS19540 (RZV16_19485) - 4592630..4594603 (-) 1974 WP_228335035.1 beta-N-acetylglucosaminidase domain-containing protein -
  RZV16_RS19545 (RZV16_19490) - 4595062..4595436 (-) 375 WP_349777458.1 P-II family nitrogen regulator -
  RZV16_RS19550 (RZV16_19495) - 4595590..4595874 (+) 285 WP_039411142.1 accessory factor UbiK family protein -
  RZV16_RS19555 (RZV16_19500) comM 4595890..4597410 (+) 1521 WP_228335034.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RZV16_RS19560 (RZV16_19505) - 4597630..4598139 (+) 510 WP_166744882.1 lipocalin family protein -
  RZV16_RS19565 (RZV16_19510) - 4598725..4598901 (-) 177 WP_068835690.1 hypothetical protein -
  RZV16_RS19570 (RZV16_19515) - 4599284..4600834 (+) 1551 WP_228335033.1 EAL domain-containing protein -
  RZV16_RS19575 (RZV16_19520) - 4601234..4602355 (-) 1122 WP_228335032.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53890.72 Da        Isoelectric Point: 9.1567

>NTDB_id=891676 RZV16_RS19555 WP_228335034.1 4595890..4597410(+) (comM) [Xanthomonas cannabis strain DAR82727]
MSLALVHSRARVGVQAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVRAFTARTL
LEVCAALNGTQQAPAAALAVATLGTSALPDMADVRGQPHARRALEIAAAGGHHLLLMGSPGCGKTLLASRLPGLLPDASD
TEALETAAIRSISGRGLDLARWRQRPYRSPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHIDVPRLPPQALRSGN
PGEDSASVRARVVAARQRQLARGPLPNARLDQPDTDRHCRLHGDDQLLLERAIEHLQLSARSMHRILRVARTIADLDDSA
VIATRHLTEAIGYRKLDRALAPASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=891676 RZV16_RS19555 WP_228335034.1 4595890..4597410(+) (comM) [Xanthomonas cannabis strain DAR82727]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTAGGGGTGCAAGCGCCCGAGGTCCGGGTGGAAGTGCATCTCTCCGG
GGGTCTCCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCGGCGGTGCGCGAATCGCGCGAACGCGTGCGTGCGGCCCTGC
TGTGTGCGCAGTTTGAATTCCCGGCGCGGCGCATCACCATCAACCTGGCGCCAGCGGATCTGCCCAAGGACGGCGGTCGC
TTCGATCTGCCGATTGCGCTTGGCATCCTGGCTGCCAGCGGGCAGATCGACCGGCAGGCGCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCGCTGACCGGCGAGTTGCGCGGCGTCGACGGCGTGCTGCCGGCGGCCCTGGCGGCCGCGCAGGCCGGAC
GACGGCTGATCGTGCCGCTGGCCAATGGCGCCGAAGCCGCCATTGCCGGGCATGTCCGGGCCTTTACCGCACGCACCCTG
CTGGAGGTGTGCGCCGCGCTCAACGGCACCCAGCAGGCACCAGCCGCCGCACTGGCAGTGGCCACGCTGGGCACGTCGGC
CCTGCCCGACATGGCCGATGTGCGCGGCCAACCGCACGCACGCCGCGCACTGGAGATCGCCGCCGCAGGGGGCCACCACT
TGCTGCTGATGGGCAGCCCCGGATGCGGCAAGACCCTGCTCGCCTCGCGCCTGCCCGGCCTGCTGCCGGACGCCAGCGAT
ACCGAGGCGCTGGAAACCGCCGCCATCCGCTCCATCAGCGGGCGCGGGCTGGATCTGGCGCGCTGGCGGCAGCGGCCCTA
CCGATCCCCGCACCACACCGCCAGTGCGGTCGCCCTGGTCGGTGGTGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGG
CCCATAACGGCGTGTTGTTTCTGGACGAGCTGCCCGAGTGGCAACGACAGACGCTCGAGGTCCTGCGCGAGCCGCTGGAA
TCGGGGCTGGTCACGATCTCGCGGGCGGCGCGCAGCGTGGATTTCCCGGCACGGTTCCAGCTGGTTGCCGCCATGAACCC
GTGCCCGTGCGGCTGGGCCGGCGATGGCAGCGGGCGCTGTCGCTGCAGCAGCGACAGCATCCGCAGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGACCGCATTGATCTGCATATCGACGTACCGCGCCTGCCGCCGCAAGCGCTGCGCAGTGGCAAC
CCGGGCGAGGACAGCGCCAGCGTGCGTGCACGCGTGGTCGCCGCGCGGCAGCGCCAGCTTGCGCGCGGCCCGCTGCCCAA
CGCACGCCTCGACCAGCCAGACACCGATCGCCACTGCCGCCTGCACGGCGACGACCAATTGCTGCTGGAACGCGCGATCG
AGCACCTGCAACTGTCCGCACGCTCGATGCACCGCATCCTGCGCGTGGCGCGCACCATCGCCGACCTGGACGACAGTGCC
GTCATCGCCACGCGCCACCTGACCGAAGCCATCGGCTATCGCAAGCTCGATCGCGCGCTTGCCCCTGCCAGCGCGGCCTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.115

100

0.571
  comM Haemophilus influenzae Rd KW20

54.599

100

0.551
  comM Glaesserella parasuis strain SC1401

53.953

100

0.54
  comM Vibrio campbellii strain DS40M4

53.953

100

0.54
  comM Legionella pneumophila str. Paris

52.008

98.419

0.512
  comM Legionella pneumophila strain ERS1305867

52.008

98.419

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.669

100

0.458