Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCV27_RS01825 Genome accession   NZ_AP024889
Coordinates   382608..383156 (+) Length   182 a.a.
NCBI ID   WP_125319634.1    Uniprot ID   A0A427U7P1
Organism   Vibrio pectenicida strain LMG 19642     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 377608..388156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV27_RS01815 galU 380710..381582 (-) 873 WP_125319636.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV27_RS01820 qstR 381690..382337 (-) 648 WP_125319635.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV27_RS01825 ssb 382608..383156 (+) 549 WP_125319634.1 single-stranded DNA-binding protein Machinery gene
  OCV27_RS01830 csrD 383310..385325 (+) 2016 WP_125319633.1 RNase E specificity factor CsrD -
  OCV27_RS01835 - 385322..386761 (+) 1440 WP_125319632.1 MSHA biogenesis protein MshI -
  OCV27_RS01840 - 386761..387411 (+) 651 WP_125319631.1 type II secretion system protein M -
  OCV27_RS01845 - 387404..387727 (+) 324 WP_125319630.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20169.24 Da        Isoelectric Point: 4.9269

>NTDB_id=89166 OCV27_RS01825 WP_125319634.1 382608..383156(+) (ssb) [Vibrio pectenicida strain LMG 19642]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSESWRDKSTGEQREKTEWHRVSLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAQAMGQPQQQGSWGQPQQPAMQQNQPPQAQQNYSQPQ
QQNPSQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=89166 OCV27_RS01825 WP_125319634.1 382608..383156(+) (ssb) [Vibrio pectenicida strain LMG 19642]
ATGGCGAGCCGTGGAGTCAACAAAGTTATTTTAGTCGGTAATCTGGGTTCTGACCCAGAAGTGCGTTATATGCCAAGTGG
TGGCGCTGTTGCGAACATTACGATTGCAACATCTGAGAGTTGGCGCGATAAATCCACAGGCGAACAGCGTGAAAAAACAG
AATGGCATCGAGTATCTTTGTTTGGTAAATTAGCTGAAGTTGCTGGTGAGTATTTGCGTAAAGGCTCTCAAGTCTATATT
GAAGGGCAATTGCAGACTCGTAAGTGGCAAGATCAGAGTGGCCAAGACCGTTATTCAACGGAAGTGGTTGTACAAGGTTT
TAATGGTGTAATGCAAATGCTGGGTGGTCGTGCTCAAGGCGGTGCACCTGCTCAAGCGATGGGTCAGCCTCAGCAGCAAG
GAAGTTGGGGGCAACCTCAGCAGCCGGCTATGCAGCAAAATCAGCCACCTCAAGCACAACAGAACTATTCACAGCCCCAA
CAACAAAATCCAAGTCAGCCTCAATATAATGAGCCGCCAATGGATTTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A427U7P1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

84.239

100

0.852
  ssb Glaesserella parasuis strain SC1401

54.497

100

0.566
  ssb Neisseria meningitidis MC58

46.739

100

0.473
  ssb Neisseria gonorrhoeae MS11

46.739

100

0.473

Multiple sequence alignment