Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCV27_RS01820 Genome accession   NZ_AP024889
Coordinates   381690..382337 (-) Length   215 a.a.
NCBI ID   WP_125319635.1    Uniprot ID   A0A3R9F938
Organism   Vibrio pectenicida strain LMG 19642     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 376690..387337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV27_RS01810 uvrA 377599..380421 (-) 2823 WP_125319637.1 excinuclease ABC subunit UvrA -
  OCV27_RS01815 galU 380710..381582 (-) 873 WP_125319636.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV27_RS01820 qstR 381690..382337 (-) 648 WP_125319635.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV27_RS01825 ssb 382608..383156 (+) 549 WP_125319634.1 single-stranded DNA-binding protein Machinery gene
  OCV27_RS01830 csrD 383310..385325 (+) 2016 WP_125319633.1 RNase E specificity factor CsrD -
  OCV27_RS01835 - 385322..386761 (+) 1440 WP_125319632.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25351.56 Da        Isoelectric Point: 9.4573

>NTDB_id=89165 OCV27_RS01820 WP_125319635.1 381690..382337(-) (qstR) [Vibrio pectenicida strain LMG 19642]
MTKNIYARTIYFLTEKKKQNDPIIERIQKKICIDIPRIEPSDLMYAMQLHKHKILMIDHQYYQSLHNQIRDLPLSNKIFE
TILFNVEKRLTTEELLCFGNIKALFYRHESIESIARGCEEVINSENWLPRKVTAQLIHYYRHVVLSQTSPATVDLTSREI
QILRCLKTGASNMQIADDLFISEFTVKSHLYQIFKKLSVKNRVQAIAWANQHMLS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=89165 OCV27_RS01820 WP_125319635.1 381690..382337(-) (qstR) [Vibrio pectenicida strain LMG 19642]
ATGACAAAAAATATTTACGCTCGGACTATTTATTTTCTAACTGAGAAAAAAAAGCAAAACGACCCTATTATCGAACGCAT
TCAAAAAAAGATATGCATTGACATTCCCCGCATCGAGCCTAGTGACCTAATGTATGCGATGCAGTTACACAAACATAAAA
TACTTATGATAGATCATCAGTATTATCAATCACTCCACAACCAAATCCGCGATCTACCTTTGTCGAACAAGATATTTGAA
ACCATTTTATTTAATGTCGAAAAACGATTAACAACCGAAGAGTTGCTGTGTTTTGGCAATATAAAAGCATTGTTTTATCG
CCACGAGTCCATAGAATCGATCGCTCGAGGGTGCGAAGAAGTTATCAATAGTGAAAATTGGCTACCCCGCAAAGTTACCG
CACAACTTATTCACTACTATCGCCATGTAGTATTGAGCCAAACATCTCCCGCTACTGTTGATCTGACCTCTCGTGAGATT
CAAATTCTAAGGTGCCTAAAAACAGGCGCTTCAAATATGCAAATTGCGGATGATCTGTTTATCAGCGAATTTACGGTTAA
ATCTCATCTATATCAAATATTTAAAAAGCTATCAGTCAAAAATAGGGTGCAGGCAATTGCTTGGGCAAATCAGCATATGC
TGTCCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9F938

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

58.879

99.535

0.586
  qstR Vibrio campbellii strain DS40M4

55.349

100

0.553
  qstR Vibrio parahaemolyticus RIMD 2210633

53.953

100

0.54

Multiple sequence alignment