Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCV27_RS00095 Genome accession   NZ_AP024889
Coordinates   21808..23331 (+) Length   507 a.a.
NCBI ID   WP_125319587.1    Uniprot ID   -
Organism   Vibrio pectenicida strain LMG 19642     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 16808..28331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV27_RS00080 - 18442..19371 (-) 930 WP_125319585.1 branched-chain amino acid transaminase -
  OCV27_RS00085 ilvM 19384..19668 (-) 285 WP_125319586.1 acetolactate synthase 2 small subunit -
  OCV27_RS00090 ilvG 19670..21316 (-) 1647 WP_125319612.1 acetolactate synthase 2 catalytic subunit -
  OCV27_RS00095 comM 21808..23331 (+) 1524 WP_125319587.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCV27_RS00100 - 23359..24342 (-) 984 WP_125319588.1 DUF2860 domain-containing protein -
  OCV27_RS00105 - 24552..25436 (+) 885 WP_125319589.1 acyltransferase -
  OCV27_RS00110 - 25492..26094 (-) 603 WP_125319590.1 thiol:disulfide interchange protein DsbA/DsbL -
  OCV27_RS00115 - 26125..27111 (-) 987 WP_125319591.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55509.69 Da        Isoelectric Point: 7.8309

>NTDB_id=89161 OCV27_RS00095 WP_125319587.1 21808..23331(+) (comM) [Vibrio pectenicida strain LMG 19642]
MGLAIIYSRASVGVEAPLVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILVASDQIPANDLPNREFIGELALSGKLRKVKGVLPAALAANRVQRSLVVPHFNGDQAALVGRDVHQSADSL
LEVCSDICGQQKLTLYQTSDCIQSIDHDRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMTE
EEAMETASVASLTQQDIHALNWKKRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNHSRANPQIILRYLSRLSGPLLDRFDMSIEIPGLPKGTLSEGGER
GEPTQTVRIRVASARNYMLERSGKVNALLGSREMEQYCPLEKQDAQFLETALHQLGLSIRAYHRIIKVARTIADLDGKER
IARHHIAEALGYRAMDRLLKQLNAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=89161 OCV27_RS00095 WP_125319587.1 21808..23331(+) (comM) [Vibrio pectenicida strain LMG 19642]
ATGGGACTTGCGATTATTTATAGCCGAGCATCGGTCGGTGTAGAAGCCCCGTTAGTCACGGTGGAAGTTCATATTAGTAA
TGGCATGCCTGGCTTTACCTTGGTGGGTTTACCTGAAACTACGGTAAAGGAATCACGAGATAGGGTGAGAAGTGCGATAA
TTAACTCCCGATTTGAATTTCCAGCAAAGCGAATCACGGTTAATTTAGCCCCCGCTGATTTGCCAAAAGAAGGAGGGCGT
TTTGATTTGCCAATCGCTCTTGGCATTTTGGTAGCTTCTGATCAAATTCCTGCAAATGATTTACCTAACAGAGAGTTTAT
AGGTGAATTGGCACTATCGGGAAAACTTCGTAAAGTGAAGGGTGTTTTACCCGCAGCGTTAGCAGCTAATAGGGTACAAA
GAAGCTTAGTTGTACCTCATTTTAATGGTGATCAAGCAGCATTAGTGGGGCGTGATGTACACCAGTCTGCTGATAGCTTA
CTTGAAGTTTGTTCTGATATCTGTGGCCAACAAAAACTGACCTTATATCAGACGAGTGATTGCATTCAATCTATTGATCA
TGACCGTGACCTGCAAGATATTATCGGTCAACAGCAGGGCAAGCGAGCACTTGAGATTGCTGCCGCTGGTAATCATAACT
TGCTCTTTTTAGGACCACCGGGTACTGGAAAAACTATGCTGGCTTCACGCCTATGTGACTTGTTACCAGAGATGACAGAG
GAAGAAGCAATGGAAACCGCATCGGTTGCTTCTCTGACTCAGCAAGATATCCATGCGCTTAATTGGAAGAAGCGTCCATT
TCGTGCGCCTCATCATTCAAGCTCCATGGCTGCTTTAGTTGGTGGAGGAACGATTCCTAGGCCGGGTGAAATTTCTTTGG
CGCACAATGGTTTGTTATTTTTAGATGAAATGCCAGAATTTGAAAGAAAAGTATTGGACTCATTGCGGGAGCCTTTGGAG
TCGGGAGAAATTATTATTTCGAGAGCTCAAGGTAAAACTCGATTTCCAGCTAGATTTCAGTTAGTTGGAGCCTTAAATCC
TAGCCCAACAGGGTATTATGAAGGTAATCATTCTAGAGCTAATCCGCAAATTATTTTGCGCTACCTCAGTCGACTTTCTG
GTCCTTTATTAGACCGCTTTGACATGTCGATAGAAATCCCCGGGTTACCTAAAGGAACTCTATCGGAAGGGGGAGAGCGT
GGAGAACCAACACAAACAGTTAGAATAAGAGTCGCAAGTGCAAGGAACTATATGCTTGAGAGATCGGGCAAAGTTAACGC
ATTACTAGGAAGTCGAGAGATGGAGCAGTATTGCCCACTTGAAAAACAAGACGCGCAATTCTTAGAAACTGCATTGCATC
AACTTGGGTTATCGATACGCGCCTATCATCGCATTATAAAAGTAGCACGAACAATAGCCGATCTTGATGGGAAAGAGCGT
ATTGCTCGGCACCACATTGCTGAAGCACTTGGTTATAGAGCAATGGATCGCTTGCTTAAACAATTGAATGCTCAGGCGGT
ATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

84.615

100

0.846
  comM Vibrio campbellii strain DS40M4

82.643

100

0.826
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

62.695

100

0.633
  comM Legionella pneumophila str. Paris

49.098

98.422

0.483
  comM Legionella pneumophila strain ERS1305867

49.098

98.422

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.688

99.803

0.426

Multiple sequence alignment