Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RY019_RS01480 Genome accession   NZ_CP136540
Coordinates   305010..305534 (+) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei strain E378246     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 300010..310534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RY019_RS01460 (RY019_01460) aphA 300334..301047 (+) 714 WP_063147065.1 acid phosphatase AphA -
  RY019_RS01465 (RY019_01465) - 301160..301576 (+) 417 WP_023299095.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RY019_RS01470 (RY019_01470) - 301579..301932 (+) 354 WP_006810472.1 MmcQ/YjbR family DNA-binding protein -
  RY019_RS01475 (RY019_01475) uvrA 301936..304758 (-) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  RY019_RS01480 (RY019_01480) ssb 305010..305534 (+) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RY019_RS01485 (RY019_01485) - 305693..306940 (+) 1248 WP_048300125.1 site-specific integrase -
  RY019_RS01490 (RY019_01490) - 306930..308489 (+) 1560 WP_047736798.1 site-specific integrase -
  RY019_RS01495 (RY019_01495) - 308482..310515 (+) 2034 WP_047736795.1 integrase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=891513 RY019_RS01480 WP_003860284.1 305010..305534(+) (ssb) [Enterobacter hormaechei strain E378246]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=891513 RY019_RS01480 WP_003860284.1 305010..305534(+) (ssb) [Enterobacter hormaechei strain E378246]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTCAACGTAGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGCGGTGGCGCTCCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAACAGCCTCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374