Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RYH70_RS19590 Genome accession   NZ_CP136538
Coordinates   4237047..4238534 (+) Length   495 a.a.
NCBI ID   WP_317009552.1    Uniprot ID   -
Organism   Alloalcanivorax xenomutans strain GOM8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4232047..4243534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYH70_RS19570 (RYH70_19570) glnK 4233123..4233461 (-) 339 WP_014996495.1 P-II family nitrogen regulator -
  RYH70_RS19575 (RYH70_19575) - 4233771..4234028 (+) 258 WP_080531707.1 accessory factor UbiK family protein -
  RYH70_RS19580 (RYH70_19580) - 4234032..4235942 (-) 1911 WP_063141137.1 alkyl/aryl-sulfatase -
  RYH70_RS19585 (RYH70_19585) - 4236043..4236942 (+) 900 WP_063141139.1 LysR family transcriptional regulator -
  RYH70_RS19590 (RYH70_19590) comM 4237047..4238534 (+) 1488 WP_317009552.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RYH70_RS19595 (RYH70_19595) - 4238506..4239414 (-) 909 WP_022994772.1 DMT family transporter -
  RYH70_RS19600 (RYH70_19600) - 4239507..4240298 (+) 792 WP_022994771.1 helix-turn-helix domain-containing protein -
  RYH70_RS19605 (RYH70_19605) - 4240306..4241052 (-) 747 WP_022994770.1 SDR family NAD(P)-dependent oxidoreductase -
  RYH70_RS19610 (RYH70_19610) - 4241252..4242286 (-) 1035 WP_080531709.1 AraC family transcriptional regulator -
  RYH70_RS19615 (RYH70_19615) - 4242690..4243454 (-) 765 WP_199466626.1 pseudouridine synthase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 53234.00 Da        Isoelectric Point: 8.2717

>NTDB_id=891475 RYH70_RS19590 WP_317009552.1 4237047..4238534(+) (comM) [Alloalcanivorax xenomutans strain GOM8]
MNITSLLSRASRGIDAVPVTVETHLAPGLPGFTIVGLPDTAVRESRDRVRSALVTSGFEFPQRRITVNLAPADLPKDGGR
FDLPIALGILLASGQLGRVDINGHEFIGELALSGRLNPVPALLPAALACADAGHTLVVPAENADEAALAGARTLAVTSLN
DLCAHLRGATPLPCHPAPDIDRQSAPHHPCLADVRGQISGKRVLEIAAAGGHSLLLCGPPGAGKSLLASRLPGLLPPLDQ
AQALEVAAVYSLRASRPAEHFLQRPYRSPHHTTSAIALVGGGSRPRPGEISLAHHGVLFLDELPEFERRVLEVLREPLET
GEVHIARTAQQLTFPARFQLVAAMNPCPCGYLGDPERGCGYRCEKARRYQARLSGPLLDRIDLHLDLPPLPAAELLQGQP
GESSERVRQRVIAARQRQQQRQGRLNRDLPADTLEAILAPHRAWLIETMERLGLSARALHRSLRVARTIADLAGADRVDR
AHLSEALSYRRNQEG

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=891475 RYH70_RS19590 WP_317009552.1 4237047..4238534(+) (comM) [Alloalcanivorax xenomutans strain GOM8]
ATGAACATTACCAGCCTGCTCAGCCGCGCCAGCCGGGGCATCGATGCCGTTCCGGTAACGGTGGAAACCCATCTGGCGCC
GGGATTGCCCGGTTTCACCATTGTCGGCCTGCCGGATACCGCGGTCCGGGAGAGCCGCGACCGGGTCCGCTCGGCGCTGG
TCACCAGCGGCTTCGAATTTCCGCAACGGCGCATCACCGTCAATCTGGCACCGGCGGACCTGCCCAAGGACGGCGGCCGT
TTCGACTTGCCCATCGCCCTGGGCATCCTGCTGGCCAGCGGCCAGTTGGGACGGGTGGACATCAATGGCCACGAATTCAT
TGGCGAGCTGGCGCTGTCCGGCCGTCTCAATCCGGTGCCGGCGCTGTTGCCCGCCGCGCTGGCCTGCGCCGACGCCGGCC
ATACCCTGGTGGTGCCGGCGGAGAATGCCGACGAGGCGGCGCTGGCTGGCGCCCGTACCCTGGCGGTGACCAGCCTCAAT
GATCTCTGCGCCCATCTGCGCGGCGCCACGCCCTTGCCTTGCCACCCCGCCCCGGACATCGACCGTCAATCGGCCCCGCA
TCATCCCTGCCTGGCCGATGTACGGGGTCAGATCAGCGGCAAACGCGTGCTGGAAATCGCCGCCGCCGGCGGCCATTCCC
TGCTACTGTGCGGCCCTCCAGGGGCCGGTAAAAGTCTGCTGGCGTCACGGCTGCCGGGCCTGCTGCCGCCACTGGACCAG
GCCCAGGCTCTGGAAGTGGCGGCCGTTTACTCGCTGCGCGCCAGCCGGCCGGCGGAGCACTTTCTGCAACGCCCCTACCG
CAGCCCCCATCACACCACCTCCGCCATTGCCCTGGTGGGCGGCGGCAGCCGCCCACGGCCGGGGGAAATTTCCCTGGCCC
ATCATGGCGTGCTGTTCCTTGATGAGTTGCCGGAATTCGAACGGCGCGTGCTGGAAGTCTTGCGGGAACCGCTGGAGACC
GGCGAGGTGCACATCGCCCGCACCGCCCAGCAACTGACGTTCCCTGCCCGCTTCCAGCTAGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTATCTTGGCGATCCCGAACGCGGCTGTGGCTACCGCTGTGAAAAGGCCCGCCGCTATCAGGCGCGCCTGT
CCGGGCCGCTGCTGGATCGCATTGATCTGCACCTGGACCTGCCGCCGCTGCCGGCGGCGGAACTGCTGCAAGGGCAGCCC
GGAGAGAGCAGTGAACGGGTACGCCAGCGAGTGATCGCCGCCCGCCAGCGGCAGCAGCAACGCCAGGGCCGGCTCAACCG
GGACCTGCCCGCCGACACGCTGGAAGCGATACTGGCGCCGCACCGCGCCTGGCTGATCGAGACCATGGAACGGCTTGGCC
TGTCCGCCCGCGCGCTGCACCGCAGCTTGCGGGTGGCCCGCACCATTGCCGATCTGGCGGGCGCGGACCGGGTGGACCGC
GCTCACCTGAGCGAGGCGCTCAGCTATCGGCGGAACCAGGAAGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-490)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.778

100

0.537
  comM Vibrio campbellii strain DS40M4

51.69

100

0.525
  comM Haemophilus influenzae Rd KW20

49.602

100

0.503
  comM Legionella pneumophila str. Paris

48.703

100

0.493
  comM Legionella pneumophila strain ERS1305867

48.703

100

0.493
  comM Glaesserella parasuis strain SC1401

48.406

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.032

100

0.426