Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCU30_RS00140 Genome accession   NZ_AP024887
Coordinates   29824..31350 (+) Length   508 a.a.
NCBI ID   WP_077315223.1    Uniprot ID   A0A1R4B7E0
Organism   Vibrio palustris strain CECT 9027     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 24824..36350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU30_RS00125 - 26457..27395 (-) 939 WP_077315226.1 branched-chain amino acid transaminase -
  OCU30_RS00130 ilvM 27407..27691 (-) 285 WP_077315225.1 acetolactate synthase 2 small subunit -
  OCU30_RS00135 ilvG 27703..29349 (-) 1647 WP_077315224.1 acetolactate synthase 2 catalytic subunit -
  OCU30_RS00140 comM 29824..31350 (+) 1527 WP_077315223.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCU30_RS00145 - 31435..32316 (+) 882 WP_077315222.1 acyltransferase -
  OCU30_RS00150 - 32397..32996 (-) 600 WP_077315221.1 thiol:disulfide interchange protein DsbA/DsbL -
  OCU30_RS00155 - 33027..34025 (-) 999 WP_077315220.1 serine/threonine protein kinase -
  OCU30_RS00160 - 34146..34412 (-) 267 WP_077315219.1 YihD family protein -
  OCU30_RS00165 - 34522..34704 (-) 183 WP_139343496.1 hypothetical protein -
  OCU30_RS00170 - 34995..35810 (+) 816 WP_077315218.1 sporulation protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55082.30 Da        Isoelectric Point: 7.4179

>NTDB_id=89128 OCU30_RS00140 WP_077315223.1 29824..31350(+) (comM) [Vibrio palustris strain CECT 9027]
MGLAIIHSRASVGVESPVVTVEVHISNGMPAFTLVGLPETTVKESRDRVRSAILNSGFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIPASLLQEYEFVGELALSGELRPVKGILPAALAVKRAKRCLVVPHHNGDQAALVAEAKHKSAQTL
LEVCAQLCGQDRLSLHQTPFIAEPPPQGRDLQDIIGQQQGKRALEIAAAGNHNILFIGPPGTGKTMLASRLCDLLPEMSD
EEAIETASVASLTHQEINQHNWKQRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPSGFYEGEKVGANPQVVLRYLGRLSGPLLDRFDMSIEIPALPQGTLAHGGDR
GESTTTVKQRVLQARHVMLARSGKVNALLQSREIDTYCSLQKADAEFLEAALHRLGLSIRAYHRIIKVARTIADLQGVAN
IERAHLAEALGYRAMDRLLKQMTDQAID

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=89128 OCU30_RS00140 WP_077315223.1 29824..31350(+) (comM) [Vibrio palustris strain CECT 9027]
ATGGGGTTAGCCATCATACATAGCCGGGCCAGTGTGGGCGTTGAGTCGCCGGTTGTTACCGTTGAAGTACATATCAGCAA
TGGTATGCCGGCGTTTACCTTAGTGGGATTACCTGAGACGACCGTCAAAGAATCTCGTGATAGAGTGCGAAGTGCCATTC
TTAATTCCGGGTTTGAGTTTCCAGCCAAGCGTATCACCGTCAATTTAGCCCCCGCAGATTTGCCTAAAGAGGGAGGACGG
TTCGATTTACCCATCGCATTAGGTATTCTTGCAGCATCGGAACAAATTCCTGCGAGCTTATTGCAGGAGTATGAATTTGT
TGGTGAGCTTGCATTGTCCGGCGAGTTAAGACCCGTTAAAGGTATTTTGCCCGCGGCATTGGCGGTTAAACGCGCCAAGC
GCTGCTTGGTTGTGCCGCATCATAATGGCGATCAAGCAGCACTGGTGGCGGAGGCTAAGCATAAATCAGCACAAACCTTA
CTCGAAGTGTGTGCGCAGCTATGCGGTCAAGATCGCCTCTCTCTACACCAAACCCCTTTTATTGCAGAGCCGCCTCCGCA
AGGGCGAGATTTACAAGATATAATCGGACAGCAACAAGGTAAACGTGCCTTAGAAATTGCTGCCGCCGGCAATCACAATA
TCTTATTTATTGGACCTCCAGGCACAGGCAAGACCATGTTAGCTTCTCGCTTGTGTGATTTATTACCCGAAATGAGCGAT
GAAGAAGCTATCGAGACCGCTTCGGTTGCTTCGTTGACGCATCAAGAGATTAATCAACATAATTGGAAGCAGCGACCATT
TCGCTCTCCGCATCACTCGAGTTCTATGGCGGCATTAGTGGGCGGCGGATCGATACCTCGTCCAGGTGAAATATCCTTGG
CTCACAATGGGTTATTATTCCTAGATGAAATGCCCGAGTTTGAGCGTAAGGTGCTTGACTCTTTGCGTGAGCCTTTAGAG
TCAGGCGAGATCATTATTTCGCGGGCGCAAGGGAAAACGCGTTTTCCTGCTCGTTTTCAACTCGTAGGCGCGCTCAATCC
TAGTCCTAGTGGCTTTTATGAGGGCGAAAAGGTAGGGGCGAACCCTCAAGTCGTTCTGCGCTATTTAGGCCGTTTATCTG
GTCCTTTGTTAGATCGTTTTGATATGTCGATAGAAATTCCAGCTTTGCCACAAGGGACTTTGGCTCATGGAGGCGACCGT
GGTGAGAGTACCACTACGGTTAAGCAACGAGTTTTGCAGGCGAGGCATGTCATGTTAGCGCGCTCAGGTAAGGTTAATGC
GTTATTGCAAAGCAGGGAAATTGATACTTACTGCTCGTTACAGAAAGCGGATGCTGAGTTTTTAGAAGCCGCTTTACATC
GGCTTGGTTTATCGATTCGCGCGTATCATCGTATTATCAAGGTGGCGCGGACAATTGCCGACTTACAAGGTGTCGCCAAT
ATTGAGCGGGCTCATTTAGCCGAAGCGCTCGGTTATCGGGCGATGGATAGGTTGTTAAAGCAAATGACGGATCAGGCGAT
CGACTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R4B7E0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.432

99.803

0.833
  comM Vibrio campbellii strain DS40M4

82.643

99.803

0.825
  comM Haemophilus influenzae Rd KW20

64.44

100

0.646
  comM Glaesserella parasuis strain SC1401

64.427

99.606

0.642
  comM Legionella pneumophila str. Paris

48.406

98.819

0.478
  comM Legionella pneumophila strain ERS1305867

48.406

98.819

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.701

100

0.437

Multiple sequence alignment