Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RTE98_RS07560 Genome accession   NZ_CP136501
Coordinates   1648129..1649625 (-) Length   498 a.a.
NCBI ID   WP_316958947.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain L27     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1643129..1654625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RTE98_RS07550 (RTE98_07550) - 1644353..1645990 (+) 1638 WP_316959214.1 EAL domain-containing protein -
  RTE98_RS07555 (RTE98_07555) - 1646021..1647997 (-) 1977 WP_152480766.1 choline BCCT transporter BetT -
  RTE98_RS07560 (RTE98_07560) comM 1648129..1649625 (-) 1497 WP_316958947.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RTE98_RS07565 (RTE98_07565) - 1649662..1649922 (-) 261 WP_013981620.1 accessory factor UbiK family protein -
  RTE98_RS07570 (RTE98_07570) glnK 1650319..1650657 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  RTE98_RS07575 (RTE98_07575) - 1650696..1652012 (+) 1317 WP_316958948.1 ammonium transporter -
  RTE98_RS07580 (RTE98_07580) - 1652135..1653385 (+) 1251 WP_063539578.1 ammonium transporter -
  RTE98_RS07585 (RTE98_07585) - 1653488..1653913 (+) 426 WP_285360162.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RTE98_RS07590 (RTE98_07590) sutA 1653993..1654319 (+) 327 WP_125868765.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53332.18 Da        Isoelectric Point: 8.1455

>NTDB_id=891196 RTE98_RS07560 WP_316958947.1 1648129..1649625(-) (comM) [Stutzerimonas frequens strain L27]
MSLAIVHSRAQIGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAILSSGFDFPARRITLNLAPADLPKDGGR
FDLSIALGILAASGQLPNERLDKLECLGELALSGALRPVQGVLPAALAARAAGRALLVPRANAEEASLASGLTVYAAEHL
LEVAAHFNGVTPLEPYVAQGLLRQVQPYPDLADVQGQQAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIHSVASHRPLEHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPNGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNAPPQT
GQSSAVLAAQVAEARQRQLARQGCANAFLDLAGLRQHCQLTTEDQAWLERACERLALSLRAAHRLLKVARTLADLEQAER
ISRQHLAEALQYRPGSQS

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=891196 RTE98_RS07560 WP_316958947.1 1648129..1649625(-) (comM) [Stutzerimonas frequens strain L27]
ATGTCCCTGGCCATCGTTCATAGCCGCGCGCAGATCGGCGTCGAAGCGCCGGCGGTGACCGTCGAAGCCCACCTGGCCAA
CGGTCTGCCGGCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGATCGCGTGCGCAGCGCCATCC
TCAGCTCCGGCTTCGATTTTCCCGCACGACGTATCACCCTCAACCTCGCCCCTGCCGATCTGCCCAAGGACGGTGGCCGC
TTCGACCTGTCCATCGCCCTGGGCATCCTTGCCGCCAGCGGCCAGCTGCCCAACGAGCGGCTGGACAAACTGGAGTGCCT
CGGCGAGCTGGCCCTGTCCGGCGCCTTGCGCCCGGTGCAGGGCGTGCTGCCCGCCGCCCTTGCCGCACGTGCCGCCGGCC
GTGCACTGCTGGTGCCGCGGGCCAACGCCGAGGAAGCCAGCCTCGCCTCGGGCCTGACCGTCTATGCCGCCGAACACTTG
CTCGAGGTCGCCGCGCACTTCAACGGCGTCACGCCACTCGAGCCCTATGTTGCCCAGGGCCTGCTACGGCAGGTACAGCC
TTACCCCGACCTGGCCGACGTGCAGGGCCAGCAGGCAGCCAAGCGCGGCCTGCTGATCGCCGCGGCCGGTGCGCACAACC
TGCTGTTTTCCGGGCCACCCGGTACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCCGGCCTGTTGCCGCCGCTGGACGAA
CAGGAGGCGCTGGAAGTCGCCGCCATCCATTCGGTGGCCAGCCACAGGCCTCTGGAGCATTGGCCGCAACGACCGTTCCG
TCAGCCCCATCACAGTGCATCAGGGCCGGCGCTGGTCGGTGGCGGCAGCCGCCCGCAGCCGGGTGAAATCACCCTGGCGC
ATCAGGGTGTGCTGTTTCTCGACGAACTGCCGGAGTTCGATCGCAAGGTACTCGAGGTCCTGCGCGAGCCGCTGGAATCC
GGCCATATCGTCATCGCCCGGGCCCGCGACAAGGTGCGCTTTCCGGCGCGTTTTCAGCTCGTCGCGGCGATGAACCCCTG
CCCCTGTGGCTACCTCGGCGACCCCAACGGACGCTGCCGCTGCACGCCGGAGCAGATCCAGCGCTACCGCAACAAGCTCT
CCGGGCCGCTGCTCGACCGCATCGACCTGCACCTGACCGTGGCGCGCGAAGCAACCGCCCTCAACGCACCGCCGCAGACC
GGCCAGAGCAGCGCGGTGCTGGCCGCGCAGGTCGCCGAGGCACGGCAGCGGCAATTGGCCCGTCAGGGCTGCGCCAACGC
CTTTCTCGATCTGGCCGGCCTGCGCCAGCACTGCCAGCTGACCACCGAAGACCAGGCCTGGCTGGAACGCGCCTGCGAAC
GCCTCGCGCTGTCGTTGCGCGCCGCGCACCGCCTGCTCAAGGTGGCGCGCACCCTCGCCGATCTGGAACAGGCCGAGCGA
ATCAGCCGTCAGCACCTTGCCGAAGCGCTGCAGTACCGCCCCGGCAGTCAAAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.768

99.398

0.564
  comM Vibrio campbellii strain DS40M4

56.566

99.398

0.562
  comM Glaesserella parasuis strain SC1401

55.777

100

0.562
  comM Haemophilus influenzae Rd KW20

55.09

100

0.554
  comM Legionella pneumophila str. Paris

50.791

100

0.516
  comM Legionella pneumophila strain ERS1305867

50.791

100

0.516
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.47