Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MHFGQ_RS00725 Genome accession   NZ_CP136419
Coordinates   126343..126783 (+) Length   146 a.a.
NCBI ID   WP_106005063.1    Uniprot ID   A0A2T0AUE3
Organism   Moorella humiferrea strain 64-FGQ     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 121343..131783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHFGQ_RS00690 (MHFGQ_01380) yedF 122496..123077 (+) 582 WP_106005057.1 sulfurtransferase-like selenium metabolism protein YedF -
  MHFGQ_RS00695 (MHFGQ_01390) - 123091..123972 (+) 882 WP_106005058.1 HEAT repeat domain-containing protein -
  MHFGQ_RS00700 (MHFGQ_01400) - 123977..124162 (+) 186 WP_106005059.1 DUF951 domain-containing protein -
  MHFGQ_RS00705 (MHFGQ_01410) - 124149..124658 (-) 510 WP_106005060.1 CGGC domain-containing protein -
  MHFGQ_RS00710 (MHFGQ_01420) - 124841..125638 (+) 798 WP_170066213.1 acyl-ACP thioesterase domain-containing protein -
  MHFGQ_RS00715 (MHFGQ_01430) - 125658..125918 (+) 261 WP_106005061.1 DUF5395 family protein -
  MHFGQ_RS00720 (MHFGQ_01440) rpsF 126034..126330 (+) 297 WP_106005062.1 30S ribosomal protein S6 -
  MHFGQ_RS00725 (MHFGQ_01450) ssbA 126343..126783 (+) 441 WP_106005063.1 single-stranded DNA-binding protein Machinery gene
  MHFGQ_RS00730 (MHFGQ_01460) rpsR 126806..127033 (+) 228 WP_106005064.1 30S ribosomal protein S18 -
  MHFGQ_RS00735 (MHFGQ_01470) - 127117..128100 (+) 984 WP_106005065.1 YybS family protein -
  MHFGQ_RS00740 (MHFGQ_01480) rplI 128107..128559 (+) 453 WP_106005098.1 50S ribosomal protein L9 -
  MHFGQ_RS00745 (MHFGQ_01490) lonC 128565..130496 (+) 1932 WP_106005066.1 Lon family ATP-dependent protease -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16079.93 Da        Isoelectric Point: 4.6616

>NTDB_id=890861 MHFGQ_RS00725 WP_106005063.1 126343..126783(+) (ssbA) [Moorella humiferrea strain 64-FGQ]
MLNRVILIGRLTRDPELRYTASGVAVTTFTLAVDRNYVNQQGERGTDFIRITTWRKLAETCANHLNKGRLVAIEGRLQTR
TYETAEGQKRQATDVVADDVRFLDWPKDGRLSGGATPAGGIGGGDFSADFDDMGTEIDIGEDDLPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=890861 MHFGQ_RS00725 WP_106005063.1 126343..126783(+) (ssbA) [Moorella humiferrea strain 64-FGQ]
ATGTTGAACCGGGTAATTTTAATCGGCCGCCTGACGCGGGACCCCGAACTGCGCTATACTGCCAGCGGCGTCGCCGTGAC
CACCTTTACCCTGGCGGTAGATCGTAATTATGTCAACCAGCAGGGGGAGCGGGGTACGGATTTCATCCGCATCACCACCT
GGCGAAAGCTGGCGGAAACCTGTGCCAACCATTTGAATAAAGGCCGCCTGGTGGCCATTGAAGGACGTCTGCAGACCCGT
ACCTATGAAACGGCAGAAGGGCAGAAACGCCAGGCCACCGATGTTGTGGCCGATGACGTTCGTTTTCTGGACTGGCCCAA
AGATGGCAGGCTTTCCGGAGGCGCCACCCCTGCCGGGGGAATAGGCGGCGGCGATTTTAGCGCGGATTTCGATGATATGG
GTACCGAAATTGACATAGGCGAGGACGATTTACCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T0AUE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.665

100

0.541
  ssb Latilactobacillus sakei subsp. sakei 23K

41.765

100

0.486
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.336

73.288

0.384
  ssb Neisseria meningitidis MC58

43.902

84.247

0.37
  ssbB Streptococcus sobrinus strain NIDR 6715-7

36.301

100

0.363